Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3274 107 2e-18 seq4300 104 2e-17 seq5785 86.0 5e-12 >seq3274 Length=969234 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TC 48573 ||||| | |||||| || ||||| |||||||||||||| || | ||| || || Sbjct 910785 AACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCGCGAGC-GTCCTTCCATC 910727 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 ||||| |||||| ||| || | || ||||||||||||||| || | | ||||||||| Sbjct 910726 CTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGTGGAATCCCTTCCTTGTC 910667 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | ||| || ||||| | | |||||||| | | |||| ||| | || || || Sbjct 910666 CTGAATCTTGGCCTTGACATTGTCAATGGTATCCGAACTCTCCACCTCCAGGGTGATAGT 910607 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| | ||| || || ||||||||||| Sbjct 910606 CTTCCCGGTCAAAGTCTTGACGAAAATCTGCAT 910574 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || ||||||||| || |||||||||||||| || ||||||| || ||| Sbjct 910092 TGAAGCGTCGACTCCTTTTGGATATTGTAATCAGCCAAGGTGCGGCCGTCCTCGAGTTGC 910033 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | | |||||| ||| ||| | | |||||||||| || || Sbjct 910032 TTTCCAGCGAAGATCAGCCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTG 909973 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || || || |||| | ||| |||| || ||||| || |||| Sbjct 909972 GCCTTGACGTTGTCG--ATCGTGTCGGAACTCTCGACTTCGAGGGTAATGGTCTTGCCGG 909915 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | || |||||||| || |||||||| Sbjct 909914 TTAGGGTTTTCACGAAGATCTGCAT 909890 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||| |||||| ||||||||||||||||| || || || | ||||| |||| Sbjct 911005 ATGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGC-AAGGGTACGGCCATCCTCGAGCT 910947 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || || | || | | ||||||||| || | | |||||||||| ||| | Sbjct 910946 GCTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGAATCT 910887 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | | |||||||| | | ||| ||| | || || || || |||| Sbjct 910886 TGGCCTTGACATTGTCAATGGTATCAGAACTCTCTACCTCCAGGGTAATCGTCTTCCCGG 910827 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | || || |||||||||||||| Sbjct 910826 TCAATGTCTTAACAAAAATCTGCAT 910802 >seq4300 Length=903212 Score = 104 bits (114), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| ||| ||||||| |||||||| ||| || | Sbjct 191508 CTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA 191449 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| ||| || | | |||||||||| || || ||||| | Sbjct 191448 GATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 191389 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || || |||| |||| ||||| || ||||| || ||||| | |||||| Sbjct 191388 GTCG--ATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTT 191331 Query 48713 ACAAAAATCTGCATC 48727 ||||| ||||||||| Sbjct 191330 ACAAAGATCTGCATC 191316 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 || ||||||||||||||||| ||||| || |||| || || ||||| ||| | | Sbjct 850548 TCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCGGCAAAG 850489 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653 || | ||||||||| ||| ||| | | ||||||||| || || ||||| | | Sbjct 850488 ATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 850429 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || ||||| |||| |||| |||| || || || || |||||||| ||||||| Sbjct 850428 TCG--ATGGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCA 850371 Query 48714 CAAAAATCTGCATC 48727 |||| ||||||||| Sbjct 850370 CAAATATCTGCATC 850357 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || || ||||||||| ||||||||||| ||||| || ||||||| Sbjct 191754 CACAAGATGGAGCGTCGACTCCTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCCTC 191695 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || | || | | |||||| ||| || | | |||||||||| Sbjct 191694 CAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTG 191635 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||| | | | || ||||| |||| |||| ||| | || || || Sbjct 191634 GATCTTGGCCTTCACGTTGTCG--ATGGTGTCGGAGCTCTCCACCTCCAGAGTGATCGTC 191577 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || || || ||||| |||||||| Sbjct 191576 TTCCCGGTCAGGGTCTTGACAAAGATCTGCAT 191545 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| ||||||||||||||| |||||||| || ||| | ||||| ||||| Sbjct 851017 ATGGAGCGTGGACTCCTTTTGAATGTTATAATCAGCTAAAGTTCGGCCATCCTCAAGCTG 850958 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | | ||||||||| || | | |||||| ||| ||| || Sbjct 850957 CTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTATCCTGAATCTT 850898 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | |||||||| | |||| ||| | || || ||||| || || Sbjct 850897 AGCCTTGACATTGTCAATGGTATCAGAGCTCTCCACCTCCAGAGTAATTGTTTTCCCAGT 850838 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || ||||||||||| Sbjct 850837 AAGAGTCTTGACGAAAATCTGCAT 850814 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||||||||| || | || || || ||||| ||| || | Sbjct 817899 CTCCTTCTGGATGTTGTAATCAGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAA 817840 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | ||||||||||||| || | | ||||||||| || || ||||| | Sbjct 817839 GATAAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 817780 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | |||| |||| || || ||||| ||||| || |||||| Sbjct 817779 GTCG--ATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTC 817722 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 817721 ACGAAGATCTGCAT 817708 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||| | ||| | || | ||| | ||| || ||||| ||||||||||| ||| Sbjct 755671 CCACCGCGGAGCCTGAGGACAAGATGCAAGGTGGATTCTTTTTGGATGTTGTAATCGGCC 755612 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | || || || ||||| ||| || | || | ||||||||||||| || Sbjct 755611 AAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGATCCGGAGGG 755552 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | ||||||||| || || ||||| | | || ||||| || | |||| Sbjct 755551 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCAGAGCTCTCCA 755494 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || ||||| ||||| || |||||||| || |||||||| Sbjct 755493 CTTCGAGAGTGATTGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 755445 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| || ||||||| |||||||| || || | Sbjct 740239 CTCCTTCTGTATGTTGTAATCGGCCAAGGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAA 740180 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | | |||||| || || | | |||||||| ||| ||| ||||| | Sbjct 740179 TATAAGCCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTT 740120 Query 48653 GACGCTATGGTATCGGTAGACTC-CGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTT 48710 | || ||||| |||| || ||| || | |||| || || ||||| ||||| || |||| Sbjct 740119 GTCG--ATGGTGTCGG-AG-CTCTCGACTTCGAGAGTAATAGTTTTGCCGGTCAGGGTTT 740064 Query 48711 TCACAAAAATCTGCAT 48726 |||| || |||||||| Sbjct 740063 TCACGAAGATCTGCAT 740048 >seq5785 Length=266748 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || || ||||| |||||||| ||| | |||||||||||||| || | | Sbjct 165424 CTCCTTCTGGATATTGTAGTCAGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCAGCAAA 165483 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || | ||||||||| || | | |||||||||| ||||| ||| | | Sbjct 165484 GATCAACCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATT 165543 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | | ||| ||| | || |||||||| || || | || ||||| Sbjct 165544 ATCAATGGTGTCTGAACTCTCAACCTCCAGGGTGATGGTTTTTCCCGTCAATGTCTTCAC 165603 Query 48715 AAAAATCTGCAT 48726 |||||||||||| Sbjct 165604 AAAAATCTGCAT 165615 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || || ||||| |||||||| ||| | |||||||||||||| || | | Sbjct 166697 CTCCTTCTGGATATTGTAGTCAGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCAGCAAA 166756 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || | ||||||||| || | | |||||||||| ||||| ||| | | Sbjct 166757 GATCAACCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATT 166816 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | | ||| ||| | || |||||||| || || | || ||||| Sbjct 166817 ATCAATGGTGTCTGAACTCTCAACCTCCAGGGTGATGGTTTTTCCCGTCAATGTCTTCAC 166876 Query 48715 AAAAATCTGCAT 48726 |||||||||||| Sbjct 166877 AAAAATCTGCAT 166888 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| |||| || ||||| ||||| | |||| ||||| ||||||||||| || | | Sbjct 165617 CCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTG-C 165675 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | | | || || |||||||| || | |||| || | ||||||||| || Sbjct 165676 AAGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGATCTGGTGG 165735 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| || || || ||| | | | ||||| || | | ||| Sbjct 165736 AATGCCTTCCTTATCTTGGATCTTGGCCTTCACATTATCAATGGTGTCCGAACTCTCTAC 165795 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || ||||| || |||||||| ||||||||||| ||||| Sbjct 165796 CTCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 165843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421119769625600