Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq5041 113 2e-20 seq20387 111 8e-20 seq23587 109 3e-19 seq3616 109 3e-19 seq24710 105 3e-18 seq14178 105 3e-18 seq24036 104 1e-17 seq19350 104 1e-17 seq24617 102 4e-17 seq22191 100 1e-16 seq20742 100 1e-16 seq18882 100 1e-16 >seq5041 Length=405719 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||| | ||||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 310618 AAAAAAACAAAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 310677 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 310678 GACGCTCTAACCAACTGAGCTAATAGGCC 310706 >seq20387 Length=728245 Score = 111 bits (122), Expect = 8e-20 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11450 TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTR 11509 || |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| Sbjct 392470 TCGAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTA 392411 Query 11510 ACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||| Sbjct 392410 ACCAACTGAGCTAATAGGCC 392391 >seq23587 Length=3331512 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 2447213 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 2447272 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||| Sbjct 2447273 CAACTGAGCTAATAGGCCG 2447291 >seq3616 Length=2317585 Score = 109 bits (120), Expect = 3e-19 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | | |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 1405769 AAAAATTGATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 1405828 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||| ||||| Sbjct 1405829 GCTCTAACCAACTGAGCTAATAGGCCG 1405855 >seq24710 Length=183161 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 120341 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 120282 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 120281 CTGAGCTAATAGGCC 120267 >seq14178 Length=3042336 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 2417030 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 2417089 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 2417090 CTGAGCTAATAGGCC 2417104 >seq24036 Length=484127 Score = 104 bits (114), Expect = 1e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 323946 AAAAATACCACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 324005 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| |||| |||||||||| ||||| Sbjct 324006 CTCTAACCAGCTGAGCTAATAGGCCG 324031 >seq19350 Length=1202040 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 999006 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 998947 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 998946 TGAGCTAATAGGCC 998933 >seq24617 Length=2251309 Score = 102 bits (112), Expect = 4e-17 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||| ||| | | |||||||| | ||||||||||||||||||||||| Sbjct 1989784 AAAAAAAAAAATGGCCTATGCAGGTCTCGAACCTACAACCTTCGCGTTATTAGCACGACG 1989725 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 1989724 CTCTAACCAACTGAGCTAATAGGCC 1989700 >seq22191 Length=361746 Score = 100 bits (110), Expect = 1e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 ||| |||||||||| | | |||||||| ||||||||||||||||||||||||||| | | Sbjct 32343 CAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTGTAA 32402 Query 11511 CCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 32403 TCAACTGAGCTAATAGGCC 32421 >seq20742 Length=1487624 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 895011 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 894952 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 894951 TGAGCTAATAGGCC 894938 >seq18882 Length=869960 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| || |||||||||||||||||||||||||| |||||| Sbjct 727017 TGGCCCATGCAGGTCTCGAACCTGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAAC 727076 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 727077 TGAGCTAATAGGCC 727090 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261409614745600