Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq22333 600 3e-167 seq17466 360 6e-95 seq14178 192 2e-44 >seq22333 Length=1412734 Score = 600 bits (664), Expect = 3e-167 Identities = 730/987 (74%), Gaps = 6/987 (1%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||||||||| | ||||||||||| || | Sbjct 733223 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 733282 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||| | | || ||| || ||||| ||||||| || || || || Sbjct 733283 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 733342 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| || || || ||||| || ||||| || || || | || ||||||||| Sbjct 733343 CCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 733402 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||||||||| || | |||| | || || || || |||| ||||| ||||| Sbjct 733403 ATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCGATA 733462 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 ||||||| ||||| | | ||||| ||||||||||| |||||||| ||| | || |||| Sbjct 733463 TGGGAAG-CGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 733521 Query 19589 CTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||||||| | || ||||| ||| ||| | |||||||||| || | | Sbjct 733522 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 733581 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 | || ||| | || ||||| || |||||| |||| || | ||||||| ||| Sbjct 733582 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGGCTGC 733641 Query 19709 TGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTA 19767 ||| ||||| | | |||||| | || ||||| |||||| ||||||||||||||| || | Sbjct 733642 TGT-TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 733700 Query 19768 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATC 19827 ||||||||||||| ||||| ||| | |||||||| || || ||||| ||||||||||| | Sbjct 733701 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 733760 Query 19828 CGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 19887 | ||||||||| | || || ||||| |||||||| || || || ||| ||||||||| | Sbjct 733761 CATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 733820 Query 19888 GAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATG 19947 | ||||| || || | |||| |||||| || || ||| ||| || | | Sbjct 733821 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 733880 Query 19948 GCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 20007 | || | ||||| ||||| ||||| || |||||||| || ||||| ||||| || |||| Sbjct 733881 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTG 733940 Query 20008 GGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTG 20067 | ||||||| || ||||||||| |||||| ||||||||||||||||||||||| || | Sbjct 733941 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGG 734000 Query 20068 CTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCA 20127 || ||| || || || || || ||| | || | | || || ||||||||||||||| Sbjct 734001 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 734060 Query 20128 ACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCA 20186 |||| |||||||| || || ||||| || ||||||||| ||||| || |||| Sbjct 734061 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGTCGTGTAATTAAT 734119 Query 20187 ACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAAT 20246 || ||||||||| | | ||| | |||||||| || | ||||||||||| || || ||| Sbjct 734120 ACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 734179 Query 20247 GCTCATAACTTCCCACTTGATTTAGCT 20273 |||||||||||||| || || ||||| Sbjct 734180 GCTCATAACTTCCCTCTAGACCTAGCT 734206 Score = 273 bits (302), Expect = 6e-69 Identities = 322/432 (75%), Gaps = 3/432 (1%) Strand=Plus/Plus Query 19844 TGTT-GCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTT 19902 |||| ||||| |||||||| || || || ||| ||||||||| || ||||| || | Sbjct 732398 TGTTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCT 732457 Query 19903 CCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGC 19962 | | |||| |||||| || || || ||| || | || || | ||||| | Sbjct 732458 CTAATTTGATCAGGGAAACCACAGAAAATAAATCTGCTAATGAAGGTTACAGATTCGGTC 732517 Query 19963 AAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTC 20022 |||| ||||| || |||||||| || ||||| ||||| || ||||| ||||||| || | Sbjct 732518 AAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCC 732577 Query 20023 AATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGG 20082 |||||||| |||||| ||||||||||||||||||||||| || ||| ||| || || | Sbjct 732578 AATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAG 732637 Query 20083 TTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTA 20142 | || || ||| | || | | || || ||||||||||||||||||| |||||||| | Sbjct 732638 TAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCA 732697 Query 20143 ACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTA 20201 | || ||||| || ||||||||| ||||| || |||| || ||||||||| | Sbjct 732698 ATTTCAACCAATCTGTAGTTGATAGTCAA-GGTCGTGTAATTAATACCTGGGCTGATATT 732756 Query 20202 TTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCA 20261 | ||| | |||||||| || | ||||||||||| || || ||||||||||||||||| Sbjct 732757 ATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCT 732816 Query 20262 CTTGATTTAGCT 20273 || || ||||| Sbjct 732817 CTAGACCTAGCT 732828 >seq17466 Length=9900 Score = 360 bits (398), Expect = 6e-95 Identities = 425/570 (75%), Gaps = 4/570 (1%) Strand=Plus/Plus Query 19706 TGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTG 19764 |||||| ||||| | |||| || |||| ||||| ||||| ||||||||||||| | | Sbjct 9177 TGCTGT-TTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAG 9235 Query 19765 GTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGC 19824 | || ||||||||||| ||||||||| | |||||||| || || ||||| |||||||||| Sbjct 9236 GAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCGGAGCACAACATCCTTATGC 9295 Query 19825 ATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGC 19884 |||| || |||||| | ||||| ||||| |||||||| || || || ||| |||||||| Sbjct 9296 ATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGC 9355 Query 19885 ACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACT 19944 | || ||||| || || | |||| |||||| ||||| ||| || || Sbjct 9356 ATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATG 9415 Query 19945 ATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACT 20004 | || || || || || ||||| |||||||| ||||| ||||| ||||| ||||| || | Sbjct 9416 AGGGTTACAAATTTGGTCAAGAAGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATT 9475 Query 20005 TTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTC 20064 |||| |||| || || ||||||||| |||||| || |||||||||||||| ||||| Sbjct 9476 TTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCT 9535 Query 20065 TTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTT 20124 | ||| ||| || || || || || ||| | || | | || || | |||||||| | Sbjct 9536 TGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCAT 9595 Query 20125 TCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATC 20183 ||||||| ||||| || || || ||||| || ||||||||| ||||| || | || Sbjct 9596 TCAACCTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGTCGCGTTATT 9654 Query 20184 CCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGC 20243 || ||||||||| | | || | ||||| || || | ||||| |||||||| || Sbjct 9655 AATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGT 9714 Query 20244 AATGCTCATAACTTCCCACTTGATTTAGCT 20273 |||||||| |||||||| || || ||||| Sbjct 9715 AATGCTCACAACTTCCCTCTAGACCTAGCT 9744 Score = 192 bits (212), Expect = 2e-44 Identities = 231/314 (74%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || ||||| ||||| ||||| | || ||||| || || | ||||| ||| Sbjct 8827 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 8886 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| | | || ||| | ||||| ||||||| ||||| || || || |||||| Sbjct 8887 ACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGAT 8946 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || |||||||| ||||| || || ||| | || |||||||||||||||||| Sbjct 8947 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATTTCT 9006 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || | |||| | || || || ||| |||| ||||| || || |||||||| Sbjct 9007 GGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCT 9066 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | || | ||||| ||||||||||| |||||||| ||| | || |||| | |||||| Sbjct 9067 GCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 9126 Query 19599 TTAATAGGAGTAGC 19612 ||| | || ||||| Sbjct 9127 TTACTTGGTGTAGC 9140 >seq14178 Length=3042336 Score = 192 bits (212), Expect = 2e-44 Identities = 285/401 (71%), Gaps = 16/401 (4%) Strand=Plus/Minus Query 19877 TGCTATGCACGGAAGTTTGGTTACTTCCTCGA---TCATCAAGGAAACAACTGAGGATGT 19933 ||||||||| || ||||||| |||| | | |||| |||||| || | ||| Sbjct 2899484 TGCTATGCATGGTTCCTTGGTTAA--CCTCTAGTTTGATCAGGGAAACCACATAAAATGA 2899427 Query 19934 ATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGC 19993 ||| || | || || | ||||| ||||| ||||| || |||||||| || ||||| Sbjct 2899426 ATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGC 2899367 Query 19994 ACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTT 20053 |||| || ||||| ||||||| || ||||||||| | |||| |||||||||||||| Sbjct 2899366 TTACGGTTATTTTGGCTGATTGATCTTCCAATATGCTAGTGTCAACAATTCTCGTTCTTT 2899307 Query 20054 ACATTTCTTTCTTGCTACTT-TCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCT 20112 ||||||||| || ||| ||| || || || || || ||| | || | |||| || Sbjct 2899306 ACATTTCTTCCTGGCTGCTTGGGCCTGTAGTAGGTATCTGGTTCACTGCTTTGGGTATTA 2899247 Query 20113 GCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTCAACG 20172 ||||||| |||| |||||| |||||||| || || ||||| || | |||| | Sbjct 2899246 GCACTATAGCTTGCAACCTAAATGGTTTCAATTTCAACCAATC---------TATCAA-G 2899197 Query 20173 GAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTA 20232 | |||| || ||||||||| | | ||| | ||||||||||| ||||||| Sbjct 2899196 GTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTCGGTACGGAAGTTA 2899137 Query 20233 TGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCT 20273 |||| || || || | |||||||||||| || || ||||| Sbjct 2899136 TGCATGAACGTAAAGGTCATAACTTCCCTCTAGACCTAGCT 2899096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144397689753600