Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq18882 145 9e-30 seq20901 141 1e-28 seq22035 93.3 5e-14 >seq18882 Length=869960 Score = 145 bits (160), Expect = 9e-30 Identities = 407/618 (66%), Gaps = 10/618 (2%) Strand=Plus/Plus Query 33293 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 33352 || ||| || || || ||||||||||| |||||||| |||| || | ||||| | Sbjct 814212 TATACAACAGGCACGCAAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTG 814271 Query 33353 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT- 33411 | || || | ||| ||||||| || |||||||| ||||||||||| | || || | Sbjct 814272 AGAATGTTAATCCCGGCATTAACCCTCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTC 814330 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCG 33468 || || ||||| || || || || |||||| || || | |||||| | || | Sbjct 814331 CCTGAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCGGCGAAAGTCTCC 814390 Query 33469 GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33528 | || ||| ||||| ||| ||||| ||| |||||| || || || | |||| Sbjct 814391 GAGCCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTT 814447 Query 33529 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33588 || ||||| | ||||||| || ||||| | | ||| | ||||| || | | Sbjct 814448 TCGATGGCGTGAAAGAGACGATTCTTTTCGTCGGAGTTTTTGATGTAAGTTTCTAGAAGC 814507 Query 33589 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33648 || |||||||| || || ||||| |||||||| || || || |||||||| | Sbjct 814508 AGCGAGTACATTTCGGAGTGGATGTTCTCAATGGCGATTTGGAAGCCGTAGAAGGCACGC 814567 Query 33649 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCC 33707 ||||||| | ||| || || || || | | | || || | || || || || || Sbjct 814568 GCCTCGGCGACCTGGACCTCCGT-CATGAACCTGCCGGCGAGGTTCTCGAGGACGATGCC 814626 Query 33708 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33767 ||| ||| || || || || | || || | | || | || ||||| | ||||| Sbjct 814627 GTCGGAGGCGGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAG 814686 Query 33768 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827 | ||| | || ||||| || | ||| ||||| || | |||||||| || || Sbjct 814687 GGCCTCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGC 814746 Query 33828 CTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887 || || || || ||||| | ||| || | || || || ||||| ||| ||||| Sbjct 814747 TTCGGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATACAAAATCG 814806 Query 33888 ATTTGGATTTGGTGCAAG 33905 || |||||||| || || Sbjct 814807 ATCGGGATTTGGGGCTAG 814824 >seq20901 Length=225483 Score = 141 bits (156), Expect = 1e-28 Identities = 388/588 (66%), Gaps = 10/588 (2%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || |||||||||||||| || || ||||||| ||||| ||||| || | Sbjct 70606 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCGTCTCGCGAGATTAGCTCGTTTGAGA 70665 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || || || ||||||| || |||||||| | ||||||||| | ||| || | Sbjct 70666 AGGTTAGCCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCCG 70725 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGC 33472 | || || || ||||| || |||||| || || |||||||| | || | | | || Sbjct 70726 AGAAAAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGC 70785 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 ||| ||||| ||| | |||||||||||||| | || || |||| |||||| | Sbjct 70786 CGTC---GATCCAATTTAGGGCCCAATCGGCCTTTCTGGCAACGCACGGCACCGTTTCAA 70842 Query 33533 TGGCATTAAAGAGATAGtttttttCAT--TACTATCTTTAACATAAGTATCGATCAAAAG 33590 ||| ||| | | | ||||| | | | ||||| | || || || | | || Sbjct 70843 AGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGT-TCTTT-ATGTACGTTTCTAGAAGGAG 70900 Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650 |||||||| || || ||||| || ||||| || || || |||||||| | || Sbjct 70901 CGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGC 70960 Query 33651 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTC 33710 ||||| | || |||||| | || | | || | ||||| || ||||| || Sbjct 70961 CTCGGAGACTTGGACTTCTTTCATGAACCTGGCAGCGAGGTTTTCGAGGACGATTCCATC 71020 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770 ||| || || || || | || || | || || | ||| ||||| | ||||| Sbjct 71021 CGAGGCGGCGAAGAAGGCGAGCACGTGAGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGA 71080 Query 33771 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 33830 | ||| | ||| || | || | || || || ||| | ||||||||||| || || Sbjct 71081 TTCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTC 71140 Query 33831 TGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 || || || ||||| | |||||| || || |||||||| || || Sbjct 71141 GGCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 71188 >seq22035 Length=61329 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| |||||||| | || ||||| || || ||||||||| || ||| | | || | Sbjct 16980 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 16921 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | ||||| || || || || | ||| || | || || || || | ||| || Sbjct 16920 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGCAACCCAACAGCAACCCTCATCAA 16862 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCA 63789 ||| || ||||||||||| || | ||| | || | ||||| | |||||| | |||| Sbjct 16861 CATATGTTGAGGTCTTTCTAC-AACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCA 16803 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| || |||||||| | || ||| || || ||||| ||||| Sbjct 16802 GGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCGATCGTAGATAAT 16754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622747856896000