Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03]
25,600 sequences; 315,806,082 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq4300 116 3e-21
seq23635 96.9 3e-15
seq3274 93.3 4e-14
seq5785 87.8 2e-12
>seq4300
Length=903212
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| |||| || || |||||||| |||| |||||| | |
Sbjct 817936 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCC 817995
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| ||||| | || || ||||| ||||| ||||| || |||||||| ||
Sbjct 817996 GACACGATCGATAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGACCAG 818055
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| ||||| | || ||| |||||||||||||| | | | | | | |||||| |||
Sbjct 818056 CAGAGGCTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGCACCTTGGCCGATTACAAC 818115
Query 24171 ATTCAAAAAGAATCTAC 24187
|| |||||||| || ||
Sbjct 818116 ATCCAAAAAGAGTCCAC 818132
Score = 111 bits (122), Expect = 1e-19
Identities = 145/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||| ||||| | || || ||||| |||| || ||| | || || ||||||| |||
Sbjct 755441 CAATATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACAATCACTCTCGAAGTGGAGAG 755500
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
| ||||||||||| | ||||| ||||| ||||| || || || ||||| ||
Sbjct 755501 CTCTGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCTCCGGA 755560
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166
||| ||| | || || | || ||| |||||||||||||||| | | | | | ||||||
Sbjct 755561 TCAGCAGCGTCTTATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCTTGGCCGATTA 755620
Query 24167 TAACATTCAAAAAGAATCTAC 24187
||||| ||||||||||| ||
Sbjct 755621 CAACATCCAAAAAGAATCCAC 755641
Score = 96.9 bits (106), Expect = 3e-15
Identities = 142/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||| ||||| | || || ||||| |||| || ||| |||| || ||||||| |||
Sbjct 817704 CAATATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATCACTCTCGAAGTGGAGAG 817763
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
| ||||||||||| | ||||| ||||| ||||| || || || ||||| ||
Sbjct 817764 CTCTGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCTCCGGA 817823
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166
||| ||| | || || | || ||| |||||||||||||||| | | | | | |||||
Sbjct 817824 TCAGCAGCGTCTTATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCTTGGCTGATTA 817883
Query 24167 TAACATTCAAAAAGAATCTAC 24187
||||| || || || || ||
Sbjct 817884 CAACATCCAGAAGGAGTCAAC 817904
Score = 95.1 bits (104), Expect = 1e-14
Identities = 141/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | ||||| ||||| | || || || | || ||| ||||||| ||| |
Sbjct 850355 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 850414
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
|||||||||||| | ||||| ||||| ||||| || || || || || ||
Sbjct 850415 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGAC 850474
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| ||| | || || | | ||| |||||||||||||| | | | | | ||||||
Sbjct 850475 CAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTAC 850534
Query 24168 AACATTCAAAAAGAATCTAC 24187
||||||||||||||||| ||
Sbjct 850535 AACATTCAAAAAGAATCCAC 850554
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
|||||| | || || || || || || || || |||| || | || || ||| |
Sbjct 191772 AATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACGATCACTCTGGAGGTGGAGAGCTC 191831
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|||||| ||||| | || || |||||| |||||||| || || ||||| || ||
Sbjct 191832 CGACACGATCGACAACGTGAAGGCGAAGATTCAGGACAAAGAGGGGATTCCTCCGGACCA 191891
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
||||| || || | || ||||||||| ||||| |||| | | | || |||||| ||
Sbjct 191892 GCAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACTCTCGCCGATTACAA 191951
Query 24170 CATTCAAAAAGAATCTAC 24187
||||||||| || || ||
Sbjct 191952 CATTCAAAAGGAGTCCAC 191969
>seq23635
Length=3246295
Score = 96.9 bits (106), Expect = 3e-15
Identities = 110/144 (76%), Gaps = 3/144 (2%)
Strand=Plus/Plus
Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143
||||| |||||||| ||||| ||||| |||||| |||||| | || || || | |||
Sbjct 165632 GACAAGGAAGGCATTCCTCCGGATCAGCAGAGATTGATTTTTGCTGGTAAACAGTTGGAA 165691
Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
|||| ||||| || || ||||||||||||||||| || || ||| |||| || || |
Sbjct 165692 GATGGCAGAA-CGCTTGCAGATTATAACATTCAAAAGGAGTCGACACTTCACTTGGTCCT 165750
Query 24203 AAGATTGAGAGGAGG-ACTATAAT 24225
|| |||| ||||| ||||| ||
Sbjct 165751 GAGGCTGAGGGGAGGAACTATGAT 165774
>seq3274
Length=969234
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|||||||| | || || ||||| |||| || || | |||||| |||||||||||
Sbjct 909887 AAAATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACCCTCGAAGTCGAGAGT 909946
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
|||||| ||||| | ||||| ||||| ||||| ||||| || || || ||
Sbjct 909947 TCCGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGAC 910006
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| ||||| ||||| | || || ||||||||||| || | | | | | | |||||
Sbjct 910007 CAGCAGAGGCTGATCTTCGCTGGAAAGCAACTCGAGGACGGCCGCACCTTGGCTGATTAC 910066
Query 24168 AACATTCAAAAAGAATCTACAATTCA 24193
|| || ||||| || || || ||||
Sbjct 910067 AATATCCAAAAGGAGTCGACGCTTCA 910092
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| |||| ||||| | |||||| ||||||||||| | |
Sbjct 910118 ATGCAGATATTCGTCAAAACCCTAACGGGAAAGACAATTACCCTCGAAGTCGAGAGCTCC 910177
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || || | ||||| ||||| ||||| ||||| || || || || ||
Sbjct 910178 GACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 910237
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| ||||| | | ||| ||||||||||| || | | | | | | ||||| ||
Sbjct 910238 CAGAGGCTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGCACCTTGGCTGATTACAAT 910297
Query 24171 ATTCAAAAAGAATCTACAATTCA 24193
|| || || ||||| || ||||
Sbjct 910298 ATCCAGAAGGAATCAACTCTTCA 910320
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| |||| || || |||| ||| | || || || | |
Sbjct 910346 ATGCAGATATTCGTTAAAACCCTAACGGGTAAGACGATCACCCTTGAGGTTGAAAGCTCC 910405
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| || ||||| | || || |||||| || || ||||| || ||||| |||||
Sbjct 910406 GATACTATCGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATTCCTCCTGATCAG 910465
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | ||||| | || ||| ||||| || ||||||| | | | | ||||||||||
Sbjct 910466 CAGCGTCTGATCTTCGCCGGGAAGCAGCTTGAAGATGGCCGTACTCTGGCCGATTATAAC 910525
Query 24171 ATTCAAAAAGAATCTAC 24187
|| || |||||||| ||
Sbjct 910526 ATCCAGAAAGAATCAAC 910542
>seq5785
Length=266748
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | |||||||| || | ||||||||| | || ||| | || || || | |
Sbjct 168028 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAAGCTCC 167969
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || || | |||||| |||||| ||||| ||||| || || || || ||
Sbjct 167968 GACACTATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGAATCCCACCAGACCAG 167909
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| || || |||| | ||||| ||||| || |||| | | | | | ||| ||||||
Sbjct 167908 CAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACCCTTGCCGACTATAAC 167849
Query 24171 ATTCAAAAAGAATCTACA 24188
||||| || || || |||
Sbjct 167848 ATTCAGAAGGAGTCCACA 167831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429801859968000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |