Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq4300 120 2e-22 seq16041 114 1e-20 seq3592 114 1e-20 seq5785 102 7e-17 seq3274 86.0 5e-12 >seq4300 Length=903212 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| || | ||| ||||| ||||||||||| |||||||| |||||| Sbjct 191771 CCTCCCCTCAGACGCAGCACAAGATGGAGCGTCGACTCCTTTTGGATGTTGTAATCGGCC 191712 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||||| || ||||| || | || |||| ||| |||||| || Sbjct 191711 AAGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGA 191652 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || || |||||| | | | | |||||| | |||| Sbjct 191651 ATCCCTTCCTTGTCCTGGATCTTGGC--CTTCACGTTGTCGATGGTGTCGGAGCTCTCCA 191594 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || || |||||||| || |||||||| |||||||| Sbjct 191593 CCTCCAGAGTGATCGTCTTCCCGGTCAGGGTCTTGACAAAGATCTGCAT 191545 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||| |||||||| ||||| | || | | ||||| | || Sbjct 191975 TGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGC 191916 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | || |||| ||| |||||| ||| | ||||||||||| ||| | | Sbjct 191915 TTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTCCTGAATCTTC 191856 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | |||||| | |||| |||| ||||| || || |||||| Sbjct 191855 GCCTTCACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGAGTGATCGTCTTCCCGGTC 191796 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 | ||| ||||| || ||||||||| Sbjct 191795 AACGTCTTGACGAAGATCTGCATT 191772 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| || || |||||||| ||||||||||| |||||| Sbjct 740046 CCTCCGCGGAGACGAAGGACAAGATGAAGGGTTGACTCCTTCTGTATGTTGTAATCGGCC 739987 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || || || ||| | ||||||| |||||||||| || Sbjct 739986 AAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGTTGGTCCGGCGGA 739927 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | |||||| | ||| Sbjct 739926 ATTCCCTCCTTGTCTTGGATCTTGGC--CTTTACGTTGTCGATGGTGTCGGAGCTCTCGA 739869 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | || || ||||| ||||| || ||||| || || |||||||| Sbjct 739868 CTTCGAGAGTAATAGTTTTGCCGGTAAGAGTTTTCACGAAGATCTGCAT 739820 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || || | || || | ||| || || |||||||| ||||||||||| ||||| Sbjct 740275 CCCTCCGCGGAGACGAAGGACAAGATGGAGGGTTGACTCCTTCTGTATGTTGTAATCGGC 740216 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| ||||||| | || || || || | ||||||| ||| ||||| || Sbjct 740215 CAAGGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAATATAAGCCTCTGCTGGTCAGGGGG 740156 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| ||||| ||| | | ||| || | | | | |||||| | ||| Sbjct 740155 GATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGAC 740096 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | || || ||||| |||||||| ||||| || || |||||||| Sbjct 740095 TTCGAGAGTAATAGTTTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 740048 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || ||||||||||| || || ||||| || ||| Sbjct 740502 CCACCACGGAGCCTGAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCC 740443 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| |||| ||| || || ||| | || |||| ||| |||||| || Sbjct 740442 AAGGTGCGACCGTCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGG 740383 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||||| | ||| || | | | ||||| | ||| Sbjct 740382 ATTCCCTCCTTGTCTTGAATTTTCGCCTTGACGTTATCGATCGTGTCTGAGCTCTCAACC 740323 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || ||||| || ||||| ||||| |||||||| Sbjct 740322 TCGAGGGTGATCGTCTTCCCGGTTAGGGTTTTAACAAAGATCTGCAT 740276 >seq16041 Length=904 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || |||| || |||| ||||| || |||||||| || |||||||||||||| Sbjct 342 CCCACCACGAAGCCGAAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 401 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || |||| |||| || | || ||||| || | || || ||||| |||||| || Sbjct 402 CAAGGTTCGTCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGG 461 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | |||||| ||||| || | | ||| || | | | | |||||| || |||| Sbjct 462 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATTGTGTCGGAGGACTCCAC 521 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGT 16940 |||| || ||||| || || || || ||||| || || |||||||| |||| Sbjct 522 CTCCAACGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTGT 574 >seq3592 Length=5743183 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || |||| || |||| ||||| || |||||||| || |||||||||||||| Sbjct 5552069 CCCACCACGAAGCCGAAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 5552010 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || |||| |||| || | || ||||| || | || || ||||| |||||| || Sbjct 5552009 CAAGGTTCGTCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGG 5551950 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | |||||| ||||| || | | ||| || | | | | |||||| || |||| Sbjct 5551949 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATTGTGTCGGAGGACTCCAC 5551890 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGT 16940 |||| || ||||| || || || || ||||| || || |||||||| |||| Sbjct 5551889 CTCCAACGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTGT 5551837 >seq5785 Length=266748 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||| |||||||| | ||| | | ||| Sbjct 167817 AGGACCAGGTGGAGTGTGGACTCCTTCTGAATGTTATAGTCGGCAAGGGTGCGGCCATCC 167876 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||||||| ||| ||||||||| || ||||| || | || || ||||| Sbjct 167877 TCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCC 167936 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | | ||||||| | ||| || | |||||| | Sbjct 167937 TGAATCTTGGCT--TTGACATTGTCAATAGTGTCGGAGCTTTCCACCTCAAGGGTGATAG 167994 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| || || || || ||||| |||||||| Sbjct 167995 TTTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 168028 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || |||| |||| ||||| ||||| ||||| || ||||||||||| || Sbjct 166890 CCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTGCA 166949 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || || | || ||||| ||| |||| | || ||| || || || Sbjct 166950 AGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGATCTGGTGGA 167009 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| || || || || || |||||| | | | |||| ||| ||| Sbjct 167010 ATGCCCTCCTTATCTTGGATCTTGGC--CTTCACATTATCAATGGTGT--CCGAACTCTC 167065 Query 16887 T--TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||| ||||| |||||||| || || || || |||||||| ||||| Sbjct 167066 TACCTCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 167116 >seq3274 Length=969234 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || ||||| ||||||||||| || ||||| || |||| ||| | ||||||| | ||| Sbjct 910092 TGAAGCGTCGACTCCTTTTGGATATTGTAATCAGCCAAGGTGCGGCCGTCCTCGAGTTGC 910033 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || |||| ||| |||||| || | || || ||||| || || Sbjct 910032 TTTCCAGCGAAGATCAGCCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTG 909973 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | |||||| ||| ||| | ||| ||||| || |||| Sbjct 909972 GC--CTTGACGTTGTCGATCGTGTCGGAACTCTCGACTTCGAGGGTAATGGTCTTGCCGG 909915 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || ||||| || || ||||||||||| Sbjct 909914 TTAGGGTTTTCACGAAGATCTGCATTTT 909887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404961612544000