Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq18882 145 1e-29 seq20901 136 5e-27 seq22035 93.3 5e-14 seq18338 87.8 2e-12 >seq18882 Length=869960 Score = 145 bits (160), Expect = 1e-29 Identities = 400/609 (66%), Gaps = 8/609 (1%) Strand=Plus/Plus Query 32650 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 32709 || ||| || || || ||||||||||| |||||||| |||| || || ||||| | Sbjct 814212 TATACAACAGGCACGCAAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTG 814271 Query 32710 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT- 32768 | || || | ||| ||||||| || |||||||| ||||||||||| | |||||| | Sbjct 814272 AGAATGTTAATCCCGGCATTAACCCTCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTC 814330 Query 32769 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA---CCG 32825 || || |||||||| || || || ||||| || || | |||||| | || | Sbjct 814331 CCTGAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCGGCGAAAGTCTCC 814390 Query 32826 GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 32885 | || ||| ||||| ||| ||||| ||| |||||| || || || | || Sbjct 814391 GAGCCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTT 814447 Query 32886 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 32945 || || || | ||||||| || ||||| | | ||| | || || || | | Sbjct 814448 TCGATGGCGTGAAAGAGACGATTCTTTTCGTCGGAGTTTTTGATGTAAGTTTCTAGAAGC 814507 Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005 || |||||||| || || ||||| |||||||| ||||| || ||||||||| | Sbjct 814508 AGCGAGTACATTTCGGAGTGGATGTTCTCAATGGCGATTTGGAAGCCGTAGAAGGCACGC 814567 Query 33006 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 33065 ||||||| | ||| || || || || | | || | || || || || ||| Sbjct 814568 GCCTCGGCGACCTGGACCTCCGTCATGAACCTGCCGGCGAGGTTCTCGAGGACGATGCCG 814627 Query 33066 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 33125 || ||| || || || || | || || | | || | || ||||| | ||||| Sbjct 814628 TCGGAGGCGGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGG 814687 Query 33126 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 33185 | ||| | || ||||| || | ||| ||||| || | |||||||| || || Sbjct 814688 GCCTCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCT 814747 Query 33186 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 33245 || || || || ||||| | ||| || | | || ||||| || || ||| ||||| | Sbjct 814748 TCGGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATACAAAATCGA 814807 Query 33246 TTTGGATTT 33254 | |||||| Sbjct 814808 TCGGGATTT 814816 >seq20901 Length=225483 Score = 136 bits (150), Expect = 5e-27 Identities = 389/589 (66%), Gaps = 12/589 (2%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || |||||||||||||| || || ||||||| |||| ||||| || | Sbjct 70606 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCGTCTCGCGAGATTAGCTCGTTTGAGA 70665 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | || || || ||||||| || |||||||| | ||||||||| | |||| || || Sbjct 70666 AGGTTAGCCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTGCCC 70724 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCG 32828 || || || || ||||| || ||||| || || |||||||| | || | | | | Sbjct 70725 GAGAAAAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 70784 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | ||| ||||| ||| | |||||||||||||| | || || |||| || || Sbjct 70785 CCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTCTGGCAACGCACGGCACCGTTTCA 70841 Query 32889 ATAGCATTAAAGAGATAGtttttttCAT--TACTATCTTTAACATATGTATCAATCAAAA 32946 | || ||| | | | ||||| | | | ||||| | || || || | | | Sbjct 70842 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGT-TCTTT-ATGTACGTTTCTAGAAGGA 70899 Query 32947 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAG 33006 | |||||||| || || ||||| || ||||| ||||| || ||||||||| | | Sbjct 70900 GCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCG 70959 Query 33007 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 33066 |||||| | || |||||| | || | | || | ||||| || ||||| | Sbjct 70960 CCTCGGAGACTTGGACTTCTTTCATGAACCTGGCAGCGAGGTTTTCGAGGACGATTCCAT 71019 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 33126 | ||| || || || || | || || | || || | ||| ||||| | ||||| Sbjct 71020 CCGAGGCGGCGAAGAAGGCGAGCACGTGAGTGATGAAGTGTTTCTCGTCGGCGGTTAGGG 71079 Query 33127 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 33186 | ||| | ||| || | || | || || || ||| | ||||||||||| || | Sbjct 71080 ATTCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTT 71139 Query 33187 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 | || || || ||||| | |||||| || | || || |||||||| || Sbjct 71140 CGGCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 71188 >seq22035 Length=61329 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| |||||||| | || ||||| || || ||||||||| || ||| | | || | Sbjct 16980 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 16921 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | ||||| || || || || | ||| || | || || || || | ||| || Sbjct 16920 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGCAACCCAACAGCAACCCTCATCAA 16862 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCA 63644 ||| || ||||||||||| || | ||| | || | ||||| | |||||| | |||| Sbjct 16861 CATATGTTGAGGTCTTTCTAC-AACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCA 16803 Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| || |||||||| | || ||| || || ||||| ||||| Sbjct 16802 GGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCGATCGTAGATAAT 16754 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | || | || || | |||| | || | || |||||| | ||||||| Sbjct 17345 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACGCGCAGCATTGGCACAATACCA 17286 Query 63287 TTGGATGTACCATTGGT-CCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 || ||||| ||||| || ||| || ||||| ||||| | |||||||| || || ||| Sbjct 17285 TTAGATGTCCCATTTGTTCCCCGA-ATATAACTTCCTGTCGCACGAATGTTGTGAACTGA 17227 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || || || || ||| ||| | || || || || |||||||| || Sbjct 17226 GACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATAT 17167 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 || || ||||||||||| ||||| Sbjct 17166 TCCTTCAATACTATCATCTTTCATG 17142 >seq18338 Length=6336 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 2256 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 2197 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||| || || || || ||||| |||||| | |||||||| || || || Sbjct 2196 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACCGAG 2137 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 2136 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 2077 Query 63407 CCCTCTATACTATCATCCATCAT 63429 || || ||||||||||| |||| Sbjct 2076 CCTTCAATACTATCATCTTTCAT 2054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633429237760000