Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03]
25,600 sequences; 315,806,082 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq18882 145 1e-29
seq20901 136 5e-27
seq22035 93.3 5e-14
seq18338 87.8 2e-12
>seq18882
Length=869960
Score = 145 bits (160), Expect = 1e-29
Identities = 400/609 (66%), Gaps = 8/609 (1%)
Strand=Plus/Plus
Query 32650 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 32709
|| ||| || || || ||||||||||| |||||||| |||| || || ||||| |
Sbjct 814212 TATACAACAGGCACGCAAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTG 814271
Query 32710 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT- 32768
| || || | ||| ||||||| || |||||||| ||||||||||| | |||||| |
Sbjct 814272 AGAATGTTAATCCCGGCATTAACCCTCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTC 814330
Query 32769 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA---CCG 32825
|| || |||||||| || || || ||||| || || | |||||| | || |
Sbjct 814331 CCTGAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCGGCGAAAGTCTCC 814390
Query 32826 GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 32885
| || ||| ||||| ||| ||||| ||| |||||| || || || | ||
Sbjct 814391 GAGCCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTT 814447
Query 32886 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 32945
|| || || | ||||||| || ||||| | | ||| | || || || | |
Sbjct 814448 TCGATGGCGTGAAAGAGACGATTCTTTTCGTCGGAGTTTTTGATGTAAGTTTCTAGAAGC 814507
Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005
|| |||||||| || || ||||| |||||||| ||||| || ||||||||| |
Sbjct 814508 AGCGAGTACATTTCGGAGTGGATGTTCTCAATGGCGATTTGGAAGCCGTAGAAGGCACGC 814567
Query 33006 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 33065
||||||| | ||| || || || || | | || | || || || || |||
Sbjct 814568 GCCTCGGCGACCTGGACCTCCGTCATGAACCTGCCGGCGAGGTTCTCGAGGACGATGCCG 814627
Query 33066 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 33125
|| ||| || || || || | || || | | || | || ||||| | |||||
Sbjct 814628 TCGGAGGCGGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGG 814687
Query 33126 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 33185
| ||| | || ||||| || | ||| ||||| || | |||||||| || ||
Sbjct 814688 GCCTCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCT 814747
Query 33186 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 33245
|| || || || ||||| | ||| || | | || ||||| || || ||| ||||| |
Sbjct 814748 TCGGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATACAAAATCGA 814807
Query 33246 TTTGGATTT 33254
| ||||||
Sbjct 814808 TCGGGATTT 814816
>seq20901
Length=225483
Score = 136 bits (150), Expect = 5e-27
Identities = 389/589 (66%), Gaps = 12/589 (2%)
Strand=Plus/Plus
Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712
||| ||| || |||||||||||||| || || ||||||| |||| ||||| || |
Sbjct 70606 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCGTCTCGCGAGATTAGCTCGTTTGAGA 70665
Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771
| || || || ||||||| || |||||||| | ||||||||| | |||| || ||
Sbjct 70666 AGGTTAGCCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTGCCC 70724
Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCG 32828
|| || || || ||||| || ||||| || || |||||||| | || | | | |
Sbjct 70725 GAGAAAAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 70784
Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888
| ||| ||||| ||| | |||||||||||||| | || || |||| || ||
Sbjct 70785 CCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTCTGGCAACGCACGGCACCGTTTCA 70841
Query 32889 ATAGCATTAAAGAGATAGtttttttCAT--TACTATCTTTAACATATGTATCAATCAAAA 32946
| || ||| | | | ||||| | | | ||||| | || || || | | |
Sbjct 70842 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGT-TCTTT-ATGTACGTTTCTAGAAGGA 70899
Query 32947 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAG 33006
| |||||||| || || ||||| || ||||| ||||| || ||||||||| | |
Sbjct 70900 GCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCG 70959
Query 33007 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 33066
|||||| | || |||||| | || | | || | ||||| || ||||| |
Sbjct 70960 CCTCGGAGACTTGGACTTCTTTCATGAACCTGGCAGCGAGGTTTTCGAGGACGATTCCAT 71019
Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 33126
| ||| || || || || | || || | || || | ||| ||||| | |||||
Sbjct 71020 CCGAGGCGGCGAAGAAGGCGAGCACGTGAGTGATGAAGTGTTTCTCGTCGGCGGTTAGGG 71079
Query 33127 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 33186
| ||| | ||| || | || | || || || ||| | ||||||||||| || |
Sbjct 71080 ATTCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTT 71139
Query 33187 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235
| || || || ||||| | |||||| || | || || |||||||| ||
Sbjct 71140 CGGCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 71188
>seq22035
Length=61329
Score = 93.3 bits (102), Expect = 5e-14
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526
||||| |||||||| | || ||||| || || ||||||||| || ||| | | || |
Sbjct 16980 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 16921
Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585
|| || | ||||| || || || || | ||| || | || || || || | ||| ||
Sbjct 16920 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGCAACCCAACAGCAACCCTCATCAA 16862
Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCA 63644
||| || ||||||||||| || | ||| | || | ||||| | |||||| | ||||
Sbjct 16861 CATATGTTGAGGTCTTTCTAC-AACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCA 16803
Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693
||||| || |||||||| | || ||| || || ||||| |||||
Sbjct 16802 GGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCGATCGTAGATAAT 16754
Score = 93.3 bits (102), Expect = 5e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286
||||| ||||| | || | || || | |||| | || | || |||||| | |||||||
Sbjct 17345 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACGCGCAGCATTGGCACAATACCA 17286
Query 63287 TTGGATGTACCATTGGT-CCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345
|| ||||| ||||| || ||| || ||||| ||||| | |||||||| || || |||
Sbjct 17285 TTAGATGTCCCATTTGTTCCCCGA-ATATAACTTCCTGTCGCACGAATGTTGTGAACTGA 17227
Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405
| ||| || || || || ||| ||| | || || || || |||||||| ||
Sbjct 17226 GACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATAT 17167
Query 63406 GCCCTCTATACTATCATCCATCATG 63430
|| || ||||||||||| |||||
Sbjct 17166 TCCTTCAATACTATCATCTTTCATG 17142
>seq18338
Length=6336
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286
||||||||||| | || | || || | |||| | || | || |||||| | ||| |||
Sbjct 2256 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 2197
Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346
|||||||| || || || || ||||| |||||| | |||||||| || || ||
Sbjct 2196 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACCGAG 2137
Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406
| ||| || || || || ||| ||| | || || || || || ||||||||
Sbjct 2136 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 2077
Query 63407 CCCTCTATACTATCATCCATCAT 63429
|| || ||||||||||| ||||
Sbjct 2076 CCTTCAATACTATCATCTTTCAT 2054
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633429237760000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |