Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq18882 210 2e-49 seq20901 176 5e-39 seq23587 89.7 6e-13 seq23040 89.7 6e-13 seq3005 89.7 6e-13 seq22700 87.8 2e-12 seq21444 87.8 2e-12 seq23505 86.0 7e-12 seq21320 86.0 7e-12 seq20123 84.2 2e-11 seq20453 82.4 8e-11 >seq18882 Length=869960 Score = 210 bits (232), Expect = 2e-49 Identities = 512/767 (67%), Gaps = 9/767 (1%) Strand=Plus/Plus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 ||| || ||||| || ||||| |||||||||||| |||||| || | |||||| || | Sbjct 814048 CAACAACCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCAC 814107 Query 92977 AAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 | ||| || || || || ||| || || ||| |||| || | || || || |||| Sbjct 814108 CA-ACGCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCA 814166 Query 93036 AGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT-TGTACATTAAGCAC 93094 | | | || | || | | | || || | |||| | |||| | |||| Sbjct 814167 CTAACGCCTTCACGCG-CTCCTCGCTTAGCTTCGTCCTCAATAAACTATACAACAGGCAC 814225 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCT 93154 ||||| ||| || | ||| || ||||| || |||||||| || ||||||||| || Sbjct 814226 GCAAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCC 814285 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214 || | | ||||| || |||||||||||||| | |||||| || || || || || Sbjct 814286 GGCATTAACCCTCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATC 814345 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATC 93274 || |||||| ||||| || | | | ||||| ||| | | || | | |||| Sbjct 814346 CCCTCCACGCAAGCAAACGCGATTAATCTCTCGGCGAAAGTCTCCGAG---CCGTCGATC 814402 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT 93334 || ||||| ||||| |||||| || | || || | |||||||| |||| ||| Sbjct 814403 CAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTTTCGATGGCGTGAAAG 814462 Query 93335 AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 || || ||||| || | | ||||| || || | | ||| || |||||||| Sbjct 814463 AGACGATTCTTTTCGTCGGAGTTTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCG 814522 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 || |||| ||||| || || |||||||| |||||||| | || || | || ||| Sbjct 814523 GAGTGGATGTTCTCAATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGG 814582 Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 || || || || | |||| || || ||| || || ||||| || || || Sbjct 814583 ACCTCCGTCATGAACCTGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAG 814642 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT 93574 || || | | ||| | | || || ||||| ||| | | || ||||| | | Sbjct 814643 AAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGG 814702 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 ||||||| |||||||| ||||| || | ||||||||||| ||||| ||||| |||||| Sbjct 814703 AGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTAC 814762 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAA-CGAT 93680 || ||||| || | | | || ||||| || || || |||||| |||| Sbjct 814763 ATTTCCCAAATTTGTGGGTACTGAATCGGGAACAT-ACAAAATCGAT 814808 >seq20901 Length=225483 Score = 176 bits (194), Expect = 5e-39 Identities = 596/913 (65%), Gaps = 19/913 (2%) Strand=Plus/Plus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 |||||||||||||| ||| | || ||||||||||| ||||| |||| | || ||| | Sbjct 70323 TTTTGGTATTCCCCGACTCTCTTCTCAAAGAAATTCGTCTTCCCTTGAAGCGAAATCAAC 70382 Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAAT 92920 | || | | | |||||| | | || ||| | | || | | ||| Sbjct 70383 TCCATCCAATCAAACGGATTCGTCACACCGTACACCTTCCCGCACCCCAGCGCACCCAAC 70442 Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAG 92979 || ||||| || ||||| |||||||||||| |||||| | | ||||| || | || Sbjct 70443 AACCTATCTGCCACAAACTCTATGTACTGACTCATCAACGCCCCGTTCATCCCCACCAAT 70502 Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 || || || || |||||| || ||| || |||| || | || || || |||| || Sbjct 70503 GCGCAC-GGCAGCGCGTCGCACACGAACTCCCTCTCTATCTCCACCGCCTCCTTCACTAT 70561 Query 93040 TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT--TGTACATTAAGCACGCA 93097 | | || | || | | | ||| || | || | |||||| |||||||| Sbjct 70562 CCCCTTCACGCG-CTCCTCGCTTAATTT-GTTCCTCAGCAAGCTGTACAACAAGCACGCG 70619 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 || ||| || | ||||||||||| || || | ||| || ||| |||| || || Sbjct 70620 AAATCGCAGTGGAGTCCTTCGTCTCGCGAGATTAGCTCGTTTGAGAAGGTTAGCCCCGGC 70679 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACC 93216 | | || || || || | ||||||||| | ||| ||||| || || |||||||| || Sbjct 70680 ATTAACCCGCGCTTTTTTAACCAAAATATCGC-GCAGAAACTGCCCGAGAAAAATATCCC 70738 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||||||| ||||| || | | | || || || | | || | | |||||| Sbjct 70739 TTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG---CCGTCGATCCA 70795 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT-A 93335 |||| ||||||||||| ||| | || || || | ||||| | ||| |||| | Sbjct 70796 ATTTAGGGCCCAATCGGCCTTTCTGGCAACGCACGGCACCGTTTCAAAGGCGCGAAATAA 70855 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | ||| ||||| || | |||||| || || | | || || |||||||| | Sbjct 70856 GCGGCTCT-TTTCGTCGGAGTTCTTTATGTACGTTTCTAGAAGGAGCGAGTACATTTCGG 70914 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | |||| ||||| || || |||||||| |||||||| | || || | || || | Sbjct 70915 AGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGGA 70974 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 |||||| || || | |||| ||||| ||| || ||||| || || || || | Sbjct 70975 CTTCTTTCATGAACCTGGCAGCGAGGTTTTCGAGGACGATTCCATCCGAGGCGGCGAAGA 71034 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CGGA 93573 | || | | || | || || |||||||| || | | || ||||| | |||| Sbjct 71035 AGGCGAGCACGTGAGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGATTCCCACTGGCGGA 71094 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 | || | || || ||||| || || | |||||||| || ||||| ||||| ||||| Sbjct 71095 T--GTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTA 71152 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTT 93693 ||| ||||| || || | || || |||||||| ||| || || | ||||| | Sbjct 71153 CATTTCCCAGATTTCCGGGTACTGGATTGGAAACATGCAGAATCGGTCTGGGTTCGGGGT 71212 Query 93694 TAGTAACGGCTCT 93706 ||| | ||||||| Sbjct 71213 TAGCAGCGGCTCT 71225 >seq23587 Length=3331512 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/106 (80%), Gaps = 7/106 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 3246419 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 3246362 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| || ||||| ||||| |||| ||||| || || || Sbjct 3246361 GCGTGGGTTCAAATCCCACTTCTGAC-AATTGTTATTTGATTTATT 3246317 >seq23040 Length=7163423 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/102 (80%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 841757 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 841814 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||| || |||||| ||| |||| | |||| ||||||| || Sbjct 841815 TTCAAATCCCACAGCTGTCAAAATTTTAT--AAATTTTTTTT 841854 >seq3005 Length=2476929 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/107 (79%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 382635 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 382694 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||| || ||||| ||||||||| ||||| |||||| || Sbjct 382695 GTGGGTTCAAATCCCACTTCTGACAAAT--TTATTTTCATTTTTTTT 382739 Score = 89.7 bits (98), Expect = 6e-13 Identities = 77/94 (82%), Gaps = 6/94 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 2204179 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 2204122 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 ||||||||| || ||||| |||||||| | ||| Sbjct 2204121 CGTGGGTTCAAATCCCACTTCTGACAAAATTTTA 2204088 >seq22700 Length=585607 Score = 87.8 bits (96), Expect = 2e-12 Identities = 85/108 (79%), Gaps = 5/108 (5%) Strand=Plus/Minus Query 126261 TTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA 126320 ||| || ||| |||||||||||||||||||||||||||||| | |||||| || | Sbjct 276447 TTAAAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGG 276390 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368 |||||||||| || |||||| ||| || | | ||| ||||||||| Sbjct 276389 GCGTGGGTTCAAATCCCACAGCTGTCA---TGTAATTTTAATTTTTGT 276345 >seq21444 Length=5001191 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/96 (81%), Gaps = 4/96 (4%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCG 126323 ||| ||| |||||||||||||||||||||||||||||| | |||||| || | ||| Sbjct 2903529 CAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCG 2903586 Query 126324 TGGGTTCGAACCCCACACCTGACAAA--TTATTATT 126357 ||||||| || |||||| ||| |||| ||||| || Sbjct 2903587 TGGGTTCAAATCCCACAGCTGTCAAAACTTATTTTT 2903622 >seq23505 Length=2226177 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 1919851 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 1919794 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 1919793 GCGTGGGTTCAAATCCCACTTCTGACA 1919767 >seq21320 Length=1535 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/103 (80%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 1314 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 1255 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||||||| || ||||| ||||||||| ||||| |||||| Sbjct 1254 TGGGTTCAAATCCCACTTCTGACAAAT--TTATTTTCATTTTT 1214 >seq20123 Length=1272171 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/106 (78%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 1156014 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 1155957 Query 126328 TTCGAACCCCACACCTGACA---AATTATTATTGGAATTTTTGTTG 126370 ||| || |||||| ||| || | |||| ||| |||| || ||| Sbjct 1155956 TTCAAATCCCACAGCTGTCAGGCTACTATTGTTGCAATTGTTTTTG 1155911 >seq20453 Length=5924519 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 5523956 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 5523899 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 5523898 GCGTGGGTTCAAATCCCACTTCTGACA 5523872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556682604544000