Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq20901 196 9e-45 seq18882 179 7e-40 >seq20901 Length=225483 Score = 196 bits (216), Expect = 9e-45 Identities = 448/664 (67%), Gaps = 14/664 (2%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGC 42343 ||| || ||| ||| |||||| ||||||||||| || | || | || ||||| || Sbjct 71179 ATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCT-TCATTTTGGACGGC 71121 Query 42344 CGAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAA 42402 |||||| | |||||| | |||||| | ||| | ||||| || || | | |||| | Sbjct 71120 GGAGGAGGTCGACCTGTCGCAGGACATCCGCCAG-TGGGAATCCCTAACCGCCGACGAGA 71062 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 | ||| ||| || | || ||||||||||||||||| || || || ||| || | Sbjct 71061 AACACTTCATCACTCACGTGCTCGCCTTCTTCGCCGCCTCGGATGGAATCGTCCTCGAAA 71002 Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 |||| || |||||||||||||||| || || || |||||||| ||||||||||| Sbjct 71001 ACCTCGCTGCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCT 70942 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 |||| || ||||| |||||| | ||||| || ||||| | || || | ||||||| Sbjct 70941 TCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACA 70882 Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT-- 42640 | | | ||| ||| | | | | || ||| | || ||| |||| ||| | Sbjct 70881 TAAAGAACTCCGACGAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGTGCGTTG 70822 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGA 42700 | ||| ||||| || ||||| || || |||||||| | | || | || |||| || Sbjct 70821 CCAGA--AAGGCCGATTGGGCCCTAAATTGGATCGA-CGGCTCG--GAGACATTCGCGGA 70767 Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760 ||| ||| |||| ||| | ||| || || || || ||||||||| ||| | | || Sbjct 70766 GAGACTGATAGCGTTTGCTTGCGTGGAAGGGATATTTTTCTCGGGCAGTTTCTGCGCGAT 70707 Query 42761 CTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAG 42820 || ||| | || || | || ||||| || || |||||||| ||||| || ||| Sbjct 70706 ATTTTGGTTAAAAAAGCGCGGGTTAATGCCGGGGCTAACCTTCTCAAACGAGCTAATCTC 70647 Query 42821 CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA 42880 | ||||| || || || | || || || || | |||| | ||| || ||| | Sbjct 70646 GCGAGACGAAGGACTCCACTGCGATTTCGCGTG---CTTGTTGTACAGCTTGCTGAGGAA 70590 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 ||| ||||||| || || || | | |||||| |||||||| |||| ||| Sbjct 70589 CAAATTAAGCGAGGAGCGCGTGAAGGGGATAGTGAAGGAGGCGGTGGAGATAGAGAGGGA 70530 Query 42941 GTTC 42944 |||| Sbjct 70529 GTTC 70526 >seq18882 Length=869960 Score = 179 bits (198), Expect = 7e-40 Identities = 358/523 (68%), Gaps = 7/523 (1%) Strand=Plus/Minus Query 42336 TGGACCGCCGAGGAGATTGACCTGGC-CAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||||| ||||| |||| || | |||| | | ||| ||||||| | || | | Sbjct 814737 TGGACCGCTGAGGAAGTTGATCTTTCGCAAGATCTCCGCCA-CTGGGAGGCCCTAACCGC 814679 Query 42395 GAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGT 42454 |||| ||| ||| ||| || | || ||||||||||||||||| |||||||| || Sbjct 814678 TGACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGT 814619 Query 42455 CAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTT 42514 | |||||||| ||| ||||||||||| ||||| ||| | |||||||| ||| Sbjct 814618 CCTCGAGAACCTCGCCGGCAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTT 814559 Query 42515 CTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAA 42574 |||||||||||| || ||||| |||||| | ||||| || ||||| | || || | Sbjct 814558 CTACGGCTTCCAAATCGCCATTGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGA 814499 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 || |||||| | ||| ||| || | || || | ||||| || ||| | || Sbjct 814498 AACTTACATCAAAAACTCCGACGAAAAGAATCGTCTCTTTCACGCCATCGAAACGGTTCC 814439 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694 |||| || ||||| || |||||| | || |||||||| | | || | || || Sbjct 814438 CTGCGTCGCAAAGAAAGCCACGTGGGCGTTAAATTGGATCGA-CGGCTCG--GAGACTTT 814382 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTC-GGGCGCCTTCG 42753 || |||||| | | || ||| | ||| ||||| || |||||||| ||| | || | Sbjct 814381 CGCCGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTG 814322 Query 42754 CCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 | | || || |||||||| || | || ||||| ||| | || ||||| ||||| Sbjct 814321 -CGCGATATTTTGGCTCAAAAAGCGAGGGTTAATGCCGGGATTAACATTCTCAAACGAGT 814263 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856 | ||| | || ||||| || || | || ||||| ||||| Sbjct 814262 TGATCTCGCGAGATGAGGGTCTCCACTGCGATTTTGCGTGCCT 814220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944037011456000