Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4300 107 2e-18 seq25300 102 8e-17 seq16041 102 8e-17 seq3592 102 8e-17 seq5785 100 3e-16 >seq4300 Length=903212 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| || || || ||| ||||||||| || || |||| Sbjct 191510 GACTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCG 191451 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || ||||| ||||| ||| || || | Sbjct 191450 AAGATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACG 191391 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||||||||| || | || || || |||| ||||||| Sbjct 191390 TTGTCGATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTT 191331 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 191330 ACAAAGATCTGCAT 191317 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || |||||||||||||| ||| || ||| || ||| |||||||| || |||| | Sbjct 850551 GATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCGGCA 850492 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || || || || ||||| ||| || || | Sbjct 850491 AAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACG 850432 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| |||||| |||| || | || || || || || ||||| Sbjct 850431 TTGTCGATGGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTC 850372 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 850371 ACAAATATCTGCAT 850358 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || | ||| | | |||||||||| || |||||||| ||| Sbjct 740047 GCCTCCGCGGAGACGAAGGACAAGATGAAGGGTTGACTCCTTCTGTATGTTGTAATCGGC 739988 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||||||| || || || | | |||| || | |||||||||||| || Sbjct 739987 CAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGTTGGTCCGGCGG 739928 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || |||| | || | |||||||| ||| || Sbjct 739927 AATTCCCTCCTTGTCTTGGATCTTGGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCGAC 739868 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | ||||| || || |||||||| || || |||||||| Sbjct 739867 TTCGAGAGTAATAGTTTTGCCGGTAAGAGTTTTCACGAAGATCTGCAT 739820 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | || ||||| || | ||| | | ||||||||||| |||||||| ||| | Sbjct 191771 CCTCCCCTCAGACGCAGCACAAGATGGAGCGTCGACTCCTTTTGGATGTTGTAATCGGCC 191712 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| |||| || | ||| |||||||| || Sbjct 191711 AAGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGA 191652 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | |||||||| ||||||| Sbjct 191651 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACC 191592 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||| || || ||||| || || ||||| ||||||||| Sbjct 191591 TCCAGAGTGATCGTCTTCCCGGTCAGGGTCTTGACAAAGATCTGCATG 191544 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||| ||| | ||| || |||||||| || || |||| Sbjct 191966 GACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGCTTGCCGGCG 191907 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | ||| ||||||||||| || || |||||||| ||| | || | || | Sbjct 191906 AAGATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTC-CTGAATCTTCGCCTTCAC 191848 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||||| ||||||||| | || | ||| || || |||| || | Sbjct 191847 GTTG-TCGATCGTGTCGGAGCTCTCCACCTCCAGAGTGATCGTCTTCCCGGTCAACGTCT 191789 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 191788 TGACGAAGATCTGCAT 191773 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| | || |||||| || | ||| | | |||||||| ||||||||||| || Sbjct 850812 CCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGCA 850753 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||||| || || || |||| | |||| || ||||| || || || || Sbjct 850752 AGCGTCCTTCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGTGGG 850693 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||||||| || | | || | |||||| | ||| || Sbjct 850692 ATCCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACT 850633 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| || || ||||| ||||| || || |||||||| Sbjct 850632 TCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 850586 >seq25300 Length=5305897 Score = 102 bits (112), Expect = 8e-17 Identities = 147/202 (73%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCG 138477 ||||||||||||| ||||||||||| ||| | || | |||||| || || || ||| Sbjct 1946512 TTGACTCCTTTTGGATGTTGTAGTCAGCT-AGGGTTCTGCCGTCCTCAAGCTGCTTTCCG 1946454 Query 138478 GAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT 138537 | |||| ||||||||||||||||| || || || || ||||| ||| || || Sbjct 1946453 GCGAAGATGAGACGCTGTTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTG 1946394 Query 138538 A-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | ||||| | | |||||| | || || ||||| | || | || || || || || || Sbjct 1946393 ACATTGT-CGATGGTGTCCGATGATTCGACCTCTAGGGTTATAGTCTTTCCCGTTAGGGT 1946335 Query 138597 TTTTACAAAAATCTGCATGGCT 138618 ||| || || |||||||||||| Sbjct 1946334 TTTCACGAAGATCTGCATGGCT 1946313 >seq16041 Length=904 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || ||| ||||| || || |||| Sbjct 376 GACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGTCCGTCTTCGAGCTGCTTGCCGGCG 435 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 436 AAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACG 495 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||||||||| | ||| | || ||||| || || ||||| Sbjct 496 TTGTCAATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTCTTACCCGTTAGGGTTTTC 555 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 556 ACGAAGATCTGCAT 569 >seq3592 Length=5743183 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || ||| ||||| || || |||| Sbjct 5552035 GACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGTCCGTCTTCGAGCTGCTTGCCGGCG 5551976 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 5551975 AAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACG 5551916 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||||||||| | ||| | || ||||| || || ||||| Sbjct 5551915 TTGTCAATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTCTTACCCGTTAGGGTTTTC 5551856 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 5551855 ACGAAGATCTGCAT 5551842 >seq5785 Length=266748 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | |||||||||| || ||||||||||| Sbjct 242888 CCACCACGGAGACGAAGCACCAAATGGAGGGTTGACTCCTTCTGTATGTTGTAGTCAGCA 242947 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || |||||||| |||| | |||||| | |||||| || || || Sbjct 242948 AGAGTACGACCATCTTCAAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGG 243007 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | ||||| | || || Sbjct 243008 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTG-TCGATTGTGTCAGAGCTTTCAAC 243066 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || ||||| ||||| ||||| ||||||||||||||| Sbjct 243067 CTCCAAAGTTATAGTCTTACCGGTCAGGGTTTTCACAAAAATCTGCATG 243115 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | |||| ||||| || ||||||||||| | || || ||||| Sbjct 243134 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGTCCATCCTCT 243193 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 ||||||||||| | | |||| || | || ||||| || || || ||||| || || || Sbjct 243194 AGTTGTTTACCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATC-CTG 243252 Query 138526 ATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 | |||| | ||| |||| || | |||||||| |||||||| | || | || | Sbjct 243253 AATTTTGGCTTTGACATTG-TCAATGGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTCT 243311 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | ||||| || || |||||||| |||||||| Sbjct 243312 TTCCAGTGAGGGTCTTTACAAAGATCTGCAT 243342 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | |||| ||||| || ||||||||||| | || || ||||| Sbjct 171698 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCA 171757 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 |||||||| || | | |||| || | || ||||| || || || ||||| || || || Sbjct 171758 AGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATC-CTG 171816 Query 138526 ATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 | |||| | |||| |||| || | |||||| | |||||||| | || | || | Sbjct 171817 AATTTTGGCTTTAACATTG-TCAATGGTGTCCGAGCTTTCCACCTCAAGGGTGATGGTCT 171875 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | ||||| || || |||||||| || |||||| Sbjct 171876 TTCCAGTGAGGGTCTTTACAAAGATTTGCATG 171907 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || || | ||| | || || || | | |||||||||| || ||||||||||| ||| Sbjct 171452 CCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGTATGTTGTAGTCAGCT 171511 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || || || |||||||| || | | |||| | | ||| || || ||||| Sbjct 171512 -AGAGTTCGGCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGG 171570 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| ||||| ||| | || | || |||| || | ||||| | || Sbjct 171571 GATGCCTTCCTTGTC-CTGAATCTTAGCCTTGACATTG-TCAATTGTGTCAGAGCTTTCA 171628 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | |||||||| || || ||||| |||||||||||||| Sbjct 171629 ACCTCCAAAGTTATAGTTTTACCGGTAAGGGTTTTCACAAAAATCTGCAT 171678 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | || | ||||| | |||||||| || || |||||||| | Sbjct 165389 CCACCACGCAGGCGAAGGACAAGATGTAAAGTAGACTCCTTCTGGATATTGTAGTCAGCC 165448 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||||| ||||| || || || || | | |||| | | ||| || || ||||| Sbjct 165449 AAAGTACGCCCATCCTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 165508 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| || | | || | |||||| | ||| ||| Sbjct 165509 ATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATTATCAATGGTGTCTGAACTCTCAACC 165568 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || |||| || || |||||||||||||| Sbjct 165569 TCCAGGGTGATGGTTTTTCCCGTCAATGTCTTCACAAAAATCTGCAT 165615 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | || | ||||| | |||||||| || || |||||||| | Sbjct 166662 CCACCACGCAGGCGAAGGACAAGATGTAAAGTAGACTCCTTCTGGATATTGTAGTCAGCC 166721 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||||| ||||| || || || || | | |||| | | ||| || || ||||| Sbjct 166722 AAAGTACGCCCATCCTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 166781 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| || | | || | |||||| | ||| ||| Sbjct 166782 ATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATTATCAATGGTGTCTGAACTCTCAACC 166841 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || |||| || || |||||||||||||| Sbjct 166842 TCCAGGGTGATGGTTTTTCCCGTCAATGTCTTCACAAAAATCTGCAT 166888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496103596032000