Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq4300 111 1e-19 seq3274 95.1 8e-15 >seq4300 Length=903212 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || | |||||| ||| ||||||||| || || ||||||||||| ||| |||| Sbjct 755656 AGGACAAGATGCAAGGTGGATTCTTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCATCT 755597 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || | ||| || ||| | || || | |||||||||||||| || | || || ||||| Sbjct 755596 TCGAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCC 755537 Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || || || | ||| | | | ||||| | ||| ||||| || | ||| ||||| Sbjct 755536 TGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATTGT 755478 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || |||| ||||| |||||||||||||| Sbjct 755477 TTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 755445 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | || |||||| |||| ||| | || || || ||||| |||||||| || Sbjct 740958 CCACCCCTCAGACGCAGAACCAGATGAAGGGTCGACTCCTTCTGTATGTTATAATCCGCA 740899 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| || | ||||| ||| | || || || ||||||||||||| || Sbjct 740898 AGAGTCCTTCCATCCTCAAGCTGTTTGCCGGCGAAGATCAACCGCTGCTGATCCGGTGGA 740839 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || |||||| || | | | | |||||||| ||| || || Sbjct 740838 ATCCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACT 740779 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||||||||||||||| || || | || || || || ||||||||| Sbjct 740778 TCCAAAGTAATTGTTTTCCCAGTAAGGGTCTTAACAAATATCTGCATG 740731 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || | |||||||||| ||||||||| || || |||||||||||| ||| | || Sbjct 850569 AGGACAAGATGCAAAGTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCT 850510 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || | ||| |||||| |||| || | ||||||||| |||| || | || || ||||| Sbjct 850509 TCGAGTTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCC 850450 Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || || || | ||| | | | ||||| | ||| ||||| || | || ||||| Sbjct 850449 TGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCCACTTCGAGGGTGATTGT 850391 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | ||||| || || |||||||| Sbjct 850390 CTTGCCGGTGAGGGTTTTCACAAATATCTGCAT 850358 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| | || ||||| |||| ||| | ||| || || || || || ||||| || Sbjct 850812 CCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGC- 850754 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 || || | | |||| |||| || |||||| |||| || | ||||||||||| | | Sbjct 850753 -AAGCGTCCTTCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGTG 850695 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCC 39669 | | ||||| ||||| |||||| || | ||| | | || |||| | ||| || Sbjct 850694 GGATCCCTTCCTTGTCCTGGATTTTTGCCTTGA-CGTTGTCAATGGTGTCAGAGCTCTCG 850636 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||| ||| || || || ||||| | ||||| |||||||||||||| Sbjct 850635 ACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 850586 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || ||||| ||||| ||| |||| || | ||| || ||| | || Sbjct 817898 TCCTTCTGGATGTTGTAATCAGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAG 817839 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | |||||||||||||| || | || || ||||| || || || | ||| Sbjct 817838 ATAAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 817780 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | ||||| | ||| ||||| || | ||| || ||||| || |||| ||||| || Sbjct 817779 GTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTCAC 817720 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 817719 GAAGATCTGCAT 817708 >seq3274 Length=969234 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | |||||| || | || | ||| |||||| || || |||||||||||| Sbjct 910572 CCTCCACGGAGACGCAGAACAAGGTGGAGAGTTGATTCTTTCTGGATGTTATAATCGGCC 910513 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| || | || |||||| | || || | |||||||||||| | || Sbjct 910512 AGAGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCAGGAGGA 910453 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| || || || || ||| || |||| || || || | |||||| | Sbjct 910452 ATCCCTTCCTTATCTTGAATCTTGGCCTTAACATTGTCGATA--GTATCGGAGCTTTCAA 910395 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || | || || || |||||||||| ||||| ||||| ||||||||| Sbjct 910394 CCTCAAGGGTGATCGTCTTACCCGTTAGGGTTTTAACGAATATCTGCATG 910345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347261220684800