Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03]
25,600 sequences; 315,806,082 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq4300 111 1e-19
seq3274 95.1 8e-15
>seq4300
Length=903212
Score = 111 bits (122), Expect = 1e-19
Identities = 154/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567
|| || | |||||| ||| ||||||||| || || ||||||||||| ||| ||||
Sbjct 755656 AGGACAAGATGCAAGGTGGATTCTTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCATCT 755597
Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627
|| | ||| || ||| | || || | |||||||||||||| || | || || |||||
Sbjct 755596 TCGAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCC 755537
Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686
|| || || | ||| | | | ||||| | ||| ||||| || | ||| |||||
Sbjct 755536 TGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATTGT 755478
Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||| || |||| ||||| ||||||||||||||
Sbjct 755477 TTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 755445
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || | || |||||| |||| ||| | || || || ||||| |||||||| ||
Sbjct 740958 CCACCCCTCAGACGCAGAACCAGATGAAGGGTCGACTCCTTCTGTATGTTATAATCCGCA 740899
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| | | | |||| || | ||||| ||| | || || || ||||||||||||| ||
Sbjct 740898 AGAGTCCTTCCATCCTCAAGCTGTTTGCCGGCGAAGATCAACCGCTGCTGATCCGGTGGA 740839
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| ||||| || || |||||| || | | | | |||||||| ||| || ||
Sbjct 740838 ATCCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACT 740779
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
||||||||||||||||| || || | || || || || |||||||||
Sbjct 740778 TCCAAAGTAATTGTTTTCCCAGTAAGGGTCTTAACAAATATCTGCATG 740731
Score = 98.7 bits (108), Expect = 7e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567
|| || | |||||||||| ||||||||| || || |||||||||||| ||| | ||
Sbjct 850569 AGGACAAGATGCAAAGTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCT 850510
Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627
|| | ||| |||||| |||| || | ||||||||| |||| || | || || |||||
Sbjct 850509 TCGAGTTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCC 850450
Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686
|| || || | ||| | | | ||||| | ||| ||||| || | || |||||
Sbjct 850449 TGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCCACTTCGAGGGTGATTGT 850391
Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || || | ||||| || || ||||||||
Sbjct 850390 CTTGCCGGTGAGGGTTTTCACAAATATCTGCAT 850358
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||| | || ||||| |||| ||| | ||| || || || || || ||||| ||
Sbjct 850812 CCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGC- 850754
Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610
|| || | | |||| |||| || |||||| |||| || | ||||||||||| | |
Sbjct 850753 -AAGCGTCCTTCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGTG 850695
Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCC 39669
| | ||||| ||||| |||||| || | ||| | | || |||| | ||| ||
Sbjct 850694 GGATCCCTTCCTTGTCCTGGATTTTTGCCTTGA-CGTTGTCAATGGTGTCAGAGCTCTCG 850636
Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| |||| ||| || || || ||||| | ||||| ||||||||||||||
Sbjct 850635 ACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 850586
Score = 82.4 bits (90), Expect = 5e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| || || || || ||||| ||||| ||| |||| || | ||| || ||| | ||
Sbjct 817898 TCCTTCTGGATGTTGTAATCAGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAG 817839
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| | |||||||||||||| || | || || ||||| || || || | |||
Sbjct 817838 ATAAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 817780
Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707
| | | ||||| | ||| ||||| || | ||| || ||||| || |||| ||||| ||
Sbjct 817779 GTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTCAC 817720
Query 39708 GAAGATCTGCAT 39719
||||||||||||
Sbjct 817719 GAAGATCTGCAT 817708
>seq3274
Length=969234
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | |||||| || | || | ||| |||||| || || ||||||||||||
Sbjct 910572 CCTCCACGGAGACGCAGAACAAGGTGGAGAGTTGATTCTTTCTGGATGTTATAATCGGCC 910513
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| | || |||| || | || |||||| | || || | |||||||||||| | ||
Sbjct 910512 AGAGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCAGGAGGA 910453
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| ||||| || || || || ||| || |||| || || || | |||||| |
Sbjct 910452 ATCCCTTCCTTATCTTGAATCTTGGCCTTAACATTGTCGATA--GTATCGGAGCTTTCAA 910395
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
| || | || || || |||||||||| ||||| ||||| |||||||||
Sbjct 910394 CCTCAAGGGTGATCGTCTTACCCGTTAGGGTTTTAACGAATATCTGCATG 910345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347261220684800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |