Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03]
25,600 sequences; 315,806,082 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq5781 141 1e-28
seq18882 107 2e-18
seq23040 104 3e-17
seq18338 91.5 2e-13
seq22035 89.7 6e-13
>seq5781
Length=108451
Score = 141 bits (156), Expect = 1e-28
Identities = 312/462 (68%), Gaps = 12/462 (3%)
Strand=Plus/Plus
Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283
|||||| || || | | || || || || || |||| ||||| || | | |||||
Sbjct 97584 ATCAAGAATGTCCGCTCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 97643
Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343
||||||||| || |||||||| ||||||| ||||| || | ||||||||| || | |
Sbjct 97644 ACCATCCATTTCCGTCAAAAGCTGGTTAAGGGTTTGCTCTCTCTCATCATTCCCT--CCT 97701
Query 9344 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401
| | |||| | | ||| |||| ||||||||||| ||||| | || ||||| ||
Sbjct 97702 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 97761
Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461
|| ||| || ||| | | || ||||| || || || || || |||||||||
Sbjct 97762 GGAGCATTCTCTTTGGCCTTCTTGAAAAGATCTCGGACTCTAGATGCACCTACACCAACA 97821
Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520
|||||||| ||||| | | | | | || | || || || ||| | |||||| ||
Sbjct 97822 AACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGC 97880
Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580
||| || ||| ||||||||||| || || ||||| ||| | || || |||||
Sbjct 97881 AATTGCCTTGGCAAGAAGAGTCTTCCCGGTTCCTGGAGGACCAACTAGAAGAACACCCTT 97940
Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640
|||||| || ||| | |||||||||| | |||||| || ||||| | |
Sbjct 97941 TGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTGAGGAACTCCAC---CAC 97997
Query 9641 TTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679
|||| || || | ||| || | |||| || |||||||
Sbjct 97998 TTCCATGAAATCTTGTTTTGCTTCATCAACTCCGGCAACATC 98039
>seq18882
Length=869960
Score = 107 bits (118), Expect = 2e-18
Identities = 178/256 (70%), Gaps = 7/256 (3%)
Strand=Plus/Plus
Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333
||||| || |||||||||||||||||| || || | || |||||||| || ||
Sbjct 814226 GCAAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCC 814285
Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393
||||| | || ||||| || | |||| | || ||||| || ||| |||||||| ||
Sbjct 814286 GGCATTAACCCTCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATC 814345
Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG--AGCGAGACTTTGTGTCAA 117451
|||||||| || |||||||| | | | ||||||||| | |||| | ||| |
Sbjct 814346 CCCTCCACGCAAGCAAACGCGATTAATCTCTCGGCGAAAGTCTCCGAGCC-----GTCGA 814400
Query 117452 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 117511
||| || | ||||| | || ||||| | | || || || |||| |||||| | ||
Sbjct 814401 TCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTTTCGATGGCGTGAA 814460
Query 117512 ATAACTGCTTCTTTTC 117527
| | | ||||||||
Sbjct 814461 AGAGACGATTCTTTTC 814476
>seq23040
Length=7163423
Score = 104 bits (114), Expect = 3e-17
Identities = 155/218 (71%), Gaps = 14/218 (6%)
Strand=Plus/Plus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||| |||||||| || |||||||| || |||||||| || || | |||||| || ||
Sbjct 911233 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 911290
Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398
| | | | || || | | ||| | ||||| |||||||| |||||||| || ||||||
Sbjct 911291 CCTCCAAGCCCTGCTCCTCTCTGCCTCCCCACAGCATCAATTTCATCAATAAACACAATA 911350
Query 9399 CATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453
||||| | ||||| ||| | ||||| | ||| | || || ||||| |
Sbjct 911351 CATGGCGCCTTCGATTT-----GGCCTTCTCAAACAAATCCCTCACTCTGGAAGCGCCAA 911405
Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491
|||||||||||| ||| ||||| | || ||| | ||||
Sbjct 911406 CACCAACAAACAACTCGACAAACTCTGAGGCAGCACAT 911443
>seq18338
Length=6336
Score = 91.5 bits (100), Expect = 2e-13
Identities = 167/241 (69%), Gaps = 4/241 (2%)
Strand=Plus/Minus
Query 107157 AACTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 107214
|||| |||| ||| || ||||| || |||||||| || || || || | ||| || |
Sbjct 1951 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 1892
Query 107215 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 107274
|||| | |||||||||| | | |||||| | | | |||||||| || ||| |||
Sbjct 1891 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCGGAATCAATATCATCCTTGTG 1832
Query 107275 GATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAG 107334
|| || || | || | ||| ||||| | || || |||| | | | || | ||
Sbjct 1831 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGCCTTTCTACAACCTTCCCTTGGA- 1773
Query 107335 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393
|| || | || ||| | ||||||||||||||| ||||||||| || | ||| | ||||
Sbjct 1772 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 1713
Query 107394 G 107394
|
Sbjct 1712 G 1712
>seq22035
Length=61329
Score = 89.7 bits (98), Expect = 6e-13
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226
||| || |||||||| |||||||| || || || || | ||| || | ||| | |||
Sbjct 16993 CTGGGGCCTTGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTG 16934
Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286
|||||| | | |||||| | | ||||||||||||| ||| ||| | || | ||
Sbjct 16933 AGACATCATATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGCAACCCAACAGC 16874
Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 107344
|| | ||| ||||| | ||| ||| |||| | | | || | || | || ||||
Sbjct 16873 AACCCTCATCAACATATGTTGAGGTCTTTCTACAACTTTTCCTTGGA--CCTTCAAGAGG 16816
Query 107345 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394
||| | |||| |||||||||| ||||| ||| || | ||| | |||||
Sbjct 16815 TAGGACCTCTCCAGGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCG 16766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589792006144000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |