Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5781 141 1e-28 seq18882 107 2e-18 seq23040 104 3e-17 seq18338 91.5 2e-13 seq22035 89.7 6e-13 >seq5781 Length=108451 Score = 141 bits (156), Expect = 1e-28 Identities = 312/462 (68%), Gaps = 12/462 (3%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || || | | || || || || || |||| ||||| || | | ||||| Sbjct 97584 ATCAAGAATGTCCGCTCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 97643 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| || |||||||| ||||||| ||||| || | ||||||||| || | | Sbjct 97644 ACCATCCATTTCCGTCAAAAGCTGGTTAAGGGTTTGCTCTCTCTCATCATTCCCT--CCT 97701 Query 9344 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | | |||| | | ||| |||| ||||||||||| ||||| | || ||||| || Sbjct 97702 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 97761 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||| || ||| | | || ||||| || || || || || ||||||||| Sbjct 97762 GGAGCATTCTCTTTGGCCTTCTTGAAAAGATCTCGGACTCTAGATGCACCTACACCAACA 97821 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | | | || | || || || ||| | |||||| || Sbjct 97822 AACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGC 97880 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| || ||| ||||||||||| || || ||||| ||| | || || ||||| Sbjct 97881 AATTGCCTTGGCAAGAAGAGTCTTCCCGGTTCCTGGAGGACCAACTAGAAGAACACCCTT 97940 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 |||||| || ||| | |||||||||| | |||||| || ||||| | | Sbjct 97941 TGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTGAGGAACTCCAC---CAC 97997 Query 9641 TTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 |||| || || | ||| || | |||| || ||||||| Sbjct 97998 TTCCATGAAATCTTGTTTTGCTTCATCAACTCCGGCAACATC 98039 >seq18882 Length=869960 Score = 107 bits (118), Expect = 2e-18 Identities = 178/256 (70%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || |||||||||||||||||| || || | || |||||||| || || Sbjct 814226 GCAAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCC 814285 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | || ||||| || | |||| | || ||||| || ||| |||||||| || Sbjct 814286 GGCATTAACCCTCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATC 814345 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG--AGCGAGACTTTGTGTCAA 117451 |||||||| || |||||||| | | | ||||||||| | |||| | ||| | Sbjct 814346 CCCTCCACGCAAGCAAACGCGATTAATCTCTCGGCGAAAGTCTCCGAGCC-----GTCGA 814400 Query 117452 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 117511 ||| || | ||||| | || ||||| | | || || || |||| |||||| | || Sbjct 814401 TCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTTTCGATGGCGTGAA 814460 Query 117512 ATAACTGCTTCTTTTC 117527 | | | |||||||| Sbjct 814461 AGAGACGATTCTTTTC 814476 >seq23040 Length=7163423 Score = 104 bits (114), Expect = 3e-17 Identities = 155/218 (71%), Gaps = 14/218 (6%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| || |||||||| || |||||||| || || | |||||| || || Sbjct 911233 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 911290 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | | || || | | ||| | ||||| |||||||| |||||||| || |||||| Sbjct 911291 CCTCCAAGCCCTGCTCCTCTCTGCCTCCCCACAGCATCAATTTCATCAATAAACACAATA 911350 Query 9399 CATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 ||||| | ||||| ||| | ||||| | ||| | || || ||||| | Sbjct 911351 CATGGCGCCTTCGATTT-----GGCCTTCTCAAACAAATCCCTCACTCTGGAAGCGCCAA 911405 Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 |||||||||||| ||| ||||| | || ||| | |||| Sbjct 911406 CACCAACAAACAACTCGACAAACTCTGAGGCAGCACAT 911443 >seq18338 Length=6336 Score = 91.5 bits (100), Expect = 2e-13 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 107157 AACTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 107214 |||| |||| ||| || ||||| || |||||||| || || || || | ||| || | Sbjct 1951 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 1892 Query 107215 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 107274 |||| | |||||||||| | | |||||| | | | |||||||| || ||| ||| Sbjct 1891 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCGGAATCAATATCATCCTTGTG 1832 Query 107275 GATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAG 107334 || || || | || | ||| ||||| | || || |||| | | | || | || Sbjct 1831 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGCCTTTCTACAACCTTCCCTTGGA- 1773 Query 107335 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 || || | || ||| | ||||||||||||||| ||||||||| || | ||| | |||| Sbjct 1772 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 1713 Query 107394 G 107394 | Sbjct 1712 G 1712 >seq22035 Length=61329 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| || |||||||| |||||||| || || || || | ||| || | ||| | ||| Sbjct 16993 CTGGGGCCTTGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTG 16934 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| | | |||||| | | ||||||||||||| ||| ||| | || | || Sbjct 16933 AGACATCATATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGCAACCCAACAGC 16874 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 107344 || | ||| ||||| | ||| ||| |||| | | | || | || | || |||| Sbjct 16873 AACCCTCATCAACATATGTTGAGGTCTTTCTACAACTTTTCCTTGGA--CCTTCAAGAGG 16816 Query 107345 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 ||| | |||| |||||||||| ||||| ||| || | ||| | ||||| Sbjct 16815 TAGGACCTCTCCAGGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCG 16766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589792006144000