Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq22035 127 2e-24 seq18338 113 5e-20 seq5117 82.4 9e-11 >seq22035 Length=61329 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | |||||||| ||| | || | | |||||| ||||||||| Sbjct 17345 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACGCGCAGCATTGGCACAATACCA 17286 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| |||||| |||||||||||| | || | || || || ||| Sbjct 17285 TTAGATGTCCCATTTGTTCCCCGAATATAACTTCCTGTCGCACGAATGTTGTGAACTGAG 17226 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| || | ||||||| || | |||||||| ||| Sbjct 17225 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 17166 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 17165 CCTTCAATACTATCATCTTTCAT 17143 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | |||||| | ||| ||||||||||| |||||||| | || | || | Sbjct 16980 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 16921 Query 48660 TATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTAA 48718 ||||||| ||| ||||||| || || | ||| || | || | || || | ||| || Sbjct 16920 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGCAACCCAACAGCAACCCTCATCAA 16862 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||||| |||||||||||| |||| ||| | | ||||| || || || | |||| Sbjct 16861 CATATGTTGAGGTCTTTCTACAACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCAG 16802 Query 48779 TGTTTTAAAACCAAAATA 48796 ||||| || |||||||| Sbjct 16801 GGTTTTGAAGCCAAAATA 16784 >seq18338 Length=6336 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 |||||| ||||| | ||| | |||||||| ||| | || | | |||||||||||| || Sbjct 2257 ACCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 2198 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | || || ||||| ||||||||||||| | || | || || || || Sbjct 2197 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACCGA 2138 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| ||||| || || ||| || | ||||||| || | || ||||| || Sbjct 2137 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 2078 Query 48539 TCCTTCTATACTATCATCTATCATA 48563 |||||| |||||||||||| ||||| Sbjct 2077 TCCTTCAATACTATCATCTTTCATA 2053 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| | |||||| | ||| ||||||||||| | |||||| | | || | || | Sbjct 1927 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 1868 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 ||||||| |||| | ||||| ||||| | ||| || || || ||||| || | ||| | Sbjct 1867 GTATGTTTTAATAGCGGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 1809 Query 48718 ACATATATTGAGGTCTTTCAACAA 48741 |||||| ||||| ||||| |||| Sbjct 1808 ACATATGCTGAGGCCTTTCTACAA 1785 >seq5117 Length=452333 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| |||||||| || ||||| |||||| ||| | || || || || || ||| Sbjct 190495 CAAGCAAAGTCACAATGAAGCCCCTCATCTCTAGATATAAGCTCGTTCGAGAACGTCAAA 190436 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 || ||||||||||| || ||||| | ||||||||| Sbjct 190435 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATAT 190401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561928925184000