Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq22333 572 5e-159 seq17466 358 2e-94 seq14178 165 2e-36 >seq22333 Length=1412734 Score = 572 bits (634), Expect = 5e-159 Identities = 724/991 (73%), Gaps = 8/991 (1%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 734209 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 734150 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| ||||| || | | ||| ||||| || || | | ||| | ||||| || Sbjct 734149 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 734090 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || || || || || || |||||||||||| || || | || || Sbjct 734089 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 734030 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 | ||| || | || || ||||||| ||||||||||||||||||| ||| |||||| Sbjct 734029 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 733970 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || |||||||| |||||||| | || ||||| || || ||||| || || || ||||| Sbjct 733969 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 733910 Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550 |||||||||||||| |||||| | || || | || ||| | | || ||||| Sbjct 733909 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 733850 Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | || | ||| || || | |||||||||||| ||| | | || ||||| Sbjct 733849 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 733790 Query 5611 TACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAA 5670 ||| ||||| || || | ||||||||| || ||||||||||| ||||| || |||||||| Sbjct 733789 TACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 733730 Query 5671 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCC 5730 ||| | ||| ||||| |||||||||||||| || ||||||||||||||| |||||||| Sbjct 733729 TACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 733670 Query 5731 CTGTCCGAAAGGGTATACTAAAAATACTGAGTAG--GCTGCGGCAACCGGTGCTGAATAT 5788 || |||| ||||| | || || || || || ||||| ||||| || ||||||||| Sbjct 733669 TTGACCGATTGGGTAGATCAAGAAAAC--AGCAGCCGCTGCTGCAACAGGAGCTGAATAT 733612 Query 5789 GCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAG 5848 || || |||||| || ||||| || | | | ||||||||||||| | || |||| | Sbjct 733611 GCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATG 733552 Query 5849 TAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAA 5908 ||| || | ||||| | |||||| | || | || | || || || |||||||| Sbjct 733551 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTAT 733492 Query 5909 AGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGT 5966 | ||||||||| | ||| || |||||||| || || || || || || || || || Sbjct 733491 AACCATTCATCAACGGAT--GCCGCTTCCCATATCGGGTAAAAATGCAAACCGATAGCTG 733434 Query 5967 TGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGA 6026 || | || | || || || || || || ||||||||||| ||||||||||| | | Sbjct 733433 CAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAA 733374 Query 6027 CGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATG 6086 | |||||||| || ||||| || || ||||| || ||||| | ||| || | |||||| Sbjct 733373 CAGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATA 733314 Query 6087 CAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGC 6146 ||| ||||||||| || | | || ||||| || ||||||||||| || | || |||| Sbjct 733313 CAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGC 733254 Query 6147 GGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 |||| | |||||||| | ||||| |||||| Sbjct 733253 GGTTTTCAGTGCTAGTTATCCAGTTACAGAA 733223 Score = 230 bits (254), Expect = 7e-56 Identities = 312/434 (72%), Gaps = 1/434 (0%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 732831 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 732772 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| ||||| || | | ||| ||||| || || | | ||| | ||||| || Sbjct 732771 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 732712 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || || || || || || |||||||||||| || || | || || Sbjct 732711 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 732652 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 | ||| || | || || ||||||| ||||||||||||||||||| ||| |||||| Sbjct 732651 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 732592 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || |||||||| |||||||| | || ||||| || || ||||| || || || ||||| Sbjct 732591 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 732532 Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550 |||||||||||||| |||||| | || || | || ||| || | || ||||| Sbjct 732531 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTTATTTTCTGTGGTTTC 732472 Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | || | ||| || || | |||||||||||| ||| | | || ||||| Sbjct 732471 CCTGATCAAATTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 732412 Query 5611 TACCCCAGC-AACA 5623 ||| ||||| |||| Sbjct 732411 TACACCAGCTAACA 732398 >seq17466 Length=9900 Score = 358 bits (396), Expect = 2e-94 Identities = 425/575 (74%), Gaps = 1/575 (0%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 9747 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 9688 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 || |||||||| | || ||| |||||||| || | | ||| | ||||| || Sbjct 9687 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTAC 9628 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || || || || || || || |||||||| || || | || || Sbjct 9627 AGATTGGTTGAAATTGAATCCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGT 9568 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 | ||| || | || || ||||||| ||||| |||||| |||||| ||| ||||| Sbjct 9567 GAACCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 9508 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || |||||||| |||||||| | || ||||| || || ||||| || ||||||||||| Sbjct 9507 GAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATA 9448 Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550 || ||||| ||||| || ||||| || || | || ||| | |||| ||||| Sbjct 9447 AGTCTCTTCTTCTTGACCAAATTTGTAACCCTCATTAGCAGACTCATTTTCAGTGGTTTC 9388 Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | || | ||| || || | |||||||||||| ||| | | || ||||| Sbjct 9387 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 9328 Query 5611 TACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAA 5670 ||| ||||| ||||| | |||||| || |||||||||||||| ||||| || |||||||| Sbjct 9327 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCCGCCTGGAA 9268 Query 5671 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCC 5730 ||| | ||||||||| ||||||||||| || || | ||||||||||||| ||||||||| Sbjct 9267 TACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCC 9208 Query 5731 CTGTCCGAAAGGGTATACTAAAAATACTG-AGTAG 5764 || || | ||| || | || || || | ||||| Sbjct 9207 TTGACCAATAGGATAAATCAAGAAAACAGCAGTAG 9173 Score = 158 bits (174), Expect = 4e-34 Identities = 246/352 (70%), Gaps = 0/352 (0%) Strand=Plus/Minus Query 5826 TAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGA 5885 |||||||||| | || |||| ||| || | ||||| | |||||| | || | | Sbjct 9169 TAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTA 9110 Query 5886 GTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGAT 5945 | | || || || |||||||| | ||||||||| | | || |||||||| || || | Sbjct 9109 GCTCATAAGGACCGCCATTGTATAACCATTCATCAACAGATGCAGCTTCCCAAATTGGGT 9050 Query 5946 AGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTC 6005 | || || || || || || || | || | || || || || || || ||||||| Sbjct 9049 AAAAATGCAATCCGATCGCCGCAGAAGTAGGAATAATAGCACCAGAAATAATATTGTTTC 8990 Query 6006 CATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAG 6065 |||| |||| ||| || | || || ||||| || || || || || ||||| || |||| Sbjct 8989 CATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGAGCAG 8930 Query 6066 CTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACAC 6125 | | ||| || | |||||| | | ||||||||| || | | || ||||| || |||| Sbjct 8929 CGATGAAGGCGATAATAAATACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACAC 8870 Query 6126 CAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 | ||||| || | || || ||||| | ||||||||| | ||||| ||||| Sbjct 8869 CGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 8818 >seq14178 Length=3042336 Score = 165 bits (182), Expect = 2e-36 Identities = 235/331 (71%), Gaps = 11/331 (3%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| ||| | || ||||| ||||| |||||| |||| || Sbjct 2899093 AGCAGCTAGGTCTAGAGGGAAGTTATGACCTTTACGTTCATGCATAACTTCCGTACCGAG 2899152 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| ||||| || | | ||| ||||| || || | | ||| | || Sbjct 2899153 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGATAG-------- 2899204 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 | || ||||| || || || || || || |||| |||||| || |||| || || Sbjct 2899205 --ATTGGTTGAAATTGAAACCATTTAGGTTGCAAGCTATAGTGCTAATACCCAAAGCAGT 2899262 Query 5371 AAGCCATATGCAAACGACGGGCC-AAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGT 5429 | ||| || | || || |||| ||| ||||||||||||||||||| ||| ||||| Sbjct 2899263 GAACCAGATACCTACTACAGGCCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGT 2899322 Query 5430 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 5489 | | |||||||| |||||||| | || ||||| || || | ||| || || || |||| Sbjct 2899323 TGACACTAGCATATTGGAAGATCAATCAGCCAAAATAACCGTAAGCAGCTACGATATTAT 2899382 Query 5490 ACGTTTCTTCCTCTTGGCCGAATTTATATCC 5520 | |||||||||||||| |||||| | || || Sbjct 2899383 AAGTTTCTTCCTCTTGACCGAATCTGTAACC 2899413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152603194521600