Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq22333 600 1e-166 seq17466 452 4e-122 seq14178 212 7e-50 >seq22333 Length=1412734 Score = 600 bits (664), Expect = 1e-166 Identities = 714/967 (74%), Gaps = 6/967 (1%) Strand=Plus/Plus Query 162522 TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGC 162581 ||| || ||| | || | |||||||| ||||| |||||||||||| || | | || Sbjct 733246 TGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGC 733305 Query 162582 AGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAG 162641 | | || || || || || |||||||| || |||||||| ||||| || ||||| | Sbjct 733306 AACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCG 733365 Query 162642 AGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCC 162701 ||||||||| | || || || || ||||| ||||| || || |||||||| | |||| Sbjct 733366 TGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCC 733425 Query 162702 TAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA 162761 || ||| ||||| ||| | || || || || || |||||||| ||| | ||||||| Sbjct 733426 TACTTCTGCAGCTATCGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGA 733485 Query 162762 GTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCAC 162821 ||||| || ||||| || |||| | || | || | |||||| | | || | | Sbjct 733486 ATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGC 733545 Query 162822 AGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTG 162881 ||| |||||| ||||||||||| || ||| | ||||||||||||||||| Sbjct 733546 TTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGC 733605 Query 162882 TGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGG 162941 ||||||||| || || || || | ||||| ||||| |||||| |||| || |||| Sbjct 733606 TGTTGCATATTCAGCTCCTGTTGCAGCAGCGGCTGCTGTTTTCTTGATCTACCCAATCGG 733665 Query 162942 TCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTT 163001 |||||| ||| ||||| | |||||||| || || ||||||||||| |||| |||| | Sbjct 733666 TCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGAT 733725 Query 163002 CGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGG 163061 || ||||| || |||||||||||||| |||||||| ||||| ||| | || || || || Sbjct 733726 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGG 733785 Query 163062 TGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTAT 163121 ||||||||| || || || || ||||||||||| ||||| | || || ||| | | || Sbjct 733786 TGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 733845 Query 163122 CAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGA 163181 ||| ||||| || || | || || || | ||||| | ||||| ||||| ||||| Sbjct 733846 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGA 733905 Query 163182 GACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATC 163241 ||||| || || || |||||||| || || ||||| || ||||||||||| ||||| Sbjct 733906 AACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 733965 Query 163242 TTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTG 163301 ||||||||| || ||||| | || |||||||| ||||| | ||||| || | ||||| Sbjct 733966 TTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTG 734025 Query 163302 GTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 163361 ||||||||| | ||| | |||||||| |||||||| || |||||||| |||||||| Sbjct 734026 GTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 734085 Query 163362 ATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAG 163418 ||| || ||||| |||| || || ||| ||| ||||| ||||| |||| | Sbjct 734086 ATCTGTAGTTGATAGTCAAGGTCGT---GTAATTAATACCTGGGCTGATATTATTAATCG 734142 Query 163419 AGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 163478 || |||||||||||||||||||| || ||||||||||| |||||||| || ||||| Sbjct 734143 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 734202 Query 163479 TGCTGCT 163485 |||||| Sbjct 734203 AGCTGCT 734209 Score = 289 bits (320), Expect = 3e-73 Identities = 324/432 (75%), Gaps = 6/432 (1%) Strand=Plus/Plus Query 163057 GCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCT 163116 || ||||||||||| || || || || ||||||||||| ||||| | || || ||| | Sbjct 732403 GCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAAT 732462 Query 163117 CTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAA 163176 | ||||| ||||| || || | | || || | ||||| | ||||| ||||| Sbjct 732463 TTGATCAGGGAAACCACAGAAAATAAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAG 732522 Query 163177 GAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTAT 163236 ||||| ||||| || || || |||||||| || || ||||| || ||||||||||| ||| Sbjct 732523 GAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATAT 732582 Query 163237 GCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGC 163296 || ||||||||| || ||||| | || |||||||| ||||| | ||||| || | Sbjct 732583 GCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGT 732642 Query 163297 ATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTC 163356 |||||||||||||| | ||| | |||||||| |||||||| || |||||||| ||| Sbjct 732643 ATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTC 732702 Query 163357 AACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTT 163413 |||||||| || ||||| |||| || || ||| ||| ||||| ||||| || Sbjct 732703 AACCAATCTGTAGTTGATAGTCAAGGTCGT---GTAATTAATACCTGGGCTGATATTATT 732759 Query 163414 AACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTT 163473 || | || |||||||||||||||||||| || ||||||||||| |||||||| || Sbjct 732760 AATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTA 732819 Query 163474 GACCTTGCTGCT 163485 ||||| |||||| Sbjct 732820 GACCTAGCTGCT 732831 >seq17466 Length=9900 Score = 452 bits (500), Expect = 4e-122 Identities = 442/570 (78%), Gaps = 0/570 (0%) Strand=Plus/Plus Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975 ||||| |||||| | |||||| | |||||||| ||||||||| | |||||| | || Sbjct 9178 GCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGA 9237 Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 || ||||||||||| |||| ||| | || ||||| || |||||||||||||| ||||| Sbjct 9238 ATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCAT 9297 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 || || || ||| | || || || ||||||||||| ||||| || || ||||||||||| Sbjct 9298 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCAT 9357 Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC 163155 ||||| | || || ||| | | ||||| ||||| ||||| | ||||| || | Sbjct 9358 GGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAG 9417 Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||| || || || ||||||||||||||||| |||||||| |||||||| || || ||| Sbjct 9418 GGTTACAAATTTGGTCAAGAAGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTT 9477 Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275 ||||| || |||||||| ||||| |||||||||||| ||||| | ||||||||| | Sbjct 9478 GGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 9537 Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335 ||||| | ||||| || | |||||||||||||| | ||| | |||||||||||| Sbjct 9538 GCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTC 9597 Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCT 163395 ||||| || || ||||| ||||||||||| || ||||| ||| || ||| | Sbjct 9598 AACCTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAAT 9657 Query 163396 ACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAAT 163455 |||||||| |||||| | ||| | || |||||||||||||| |||||||| |||||| Sbjct 9658 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 9717 Query 163456 GCTCACAACTTCCCACTTGACCTTGCTGCT 163485 |||||||||||||| || ||||| |||||| Sbjct 9718 GCTCACAACTTCCCTCTAGACCTAGCTGCT 9747 Score = 152 bits (168), Expect = 6e-32 Identities = 184/249 (74%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCA 162595 |||| ||||||||||| |||||||||||| ||| | | ||||||| | || | Sbjct 8858 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATT---GACCGCAACTTCCGTATTTA 8914 Query 162596 TCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAG 162655 | || || ||||| || || |||||||| ||||| |||||||| | || |||||| | | Sbjct 8915 TTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTG 8974 Query 162656 GTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTA 162715 |||| | || ||||| ||||| || || ||||||||| | |||||| ||| || | Sbjct 8975 GTTCTTTACTTTATGGAAACAATATTATTTCTGGTGCTATTATTCCTACTTCTGCGGCGA 9034 Query 162716 TTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATG 162775 | || | || || || || || |||||||| ||| || ||||||| ||||| || |||| Sbjct 9035 TCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATG 9094 Query 162776 GTGGACCTT 162784 | || |||| Sbjct 9095 GCGGTCCTT 9103 >seq14178 Length=3042336 Score = 212 bits (234), Expect = 7e-50 Identities = 291/404 (72%), Gaps = 12/404 (3%) Strand=Plus/Minus Query 163084 AGTGCTATGCACGGTTCTCTTGTTA-CTTCTTCTCTTATCAGAGAAACTACTGAGCAAGA 163142 ||||||||||| ||||| | |||| | ||| | | ||||| ||||| || | | || Sbjct 2899486 AGTGCTATGCATGGTTCCTTGGTTAACCTCTAGTTTGATCAGGGAAACCACATAAAATGA 2899427 Query 163143 GTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGC 163202 || || | ||||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 2899426 ATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGC 2899367 Query 163203 TCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACT 163262 | | || || ||||| | ||||||||||| ||||| | ||||||| || ||||| | Sbjct 2899366 TTACGGTTATTTTGGCTGATTGATCTTCCAATATGCTAGTGTCAACAATTCTCGTTCTTT 2899307 Query 163263 TCACTTCTTCCTTGCTGCAT-TCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGT 163321 || |||||||| ||||| | ||||| || | |||||||||||||| ||||| | Sbjct 2899306 ACATTTCTTCCTGGCTGCTTGGGCCTGTAGTAGGTATCTGGTTCACTGCTTTGGGTATTA 2899247 Query 163322 CAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTG 163381 ||||| || | |||||| || |||||||| ||||||||||| || |||| Sbjct 2899246 GCACTATAGCTTGCAACCTAAATGGTTTCAATTTCAACCAATCTATC-------AAGGTC 2899194 Query 163382 GTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTA 163441 || || ||| ||| ||||| ||||| |||| | || || |||| |||||||| Sbjct 2899193 GT---GTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTCGGTACGGAAGTTA 2899137 Query 163442 TGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 |||| || ||||| | ||| |||||||| || ||||| |||||| Sbjct 2899136 TGCATGAACGTAAAGGTCATAACTTCCCTCTAGACCTAGCTGCT 2899093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552907812864000