Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03]
25,600 sequences; 315,806,082 total letters
Query= NC_020835.1
Length=47325
Score E
Sequences producing significant alignments: (Bits) Value
seq22333 531 2e-146
seq17466 347 4e-91
seq14178 150 5e-32
>seq22333
Length=1412734
Score = 531 bits (588), Expect = 2e-146
Identities = 720/993 (73%), Gaps = 18/993 (2%)
Strand=Plus/Minus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| ||||| |||||||||||||||||||| || ||||||||||| | ||||||||
Sbjct 734206 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 734147
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950
||| | || | | |||||||| ||| | || | ||| | | | |||||
Sbjct 734146 AGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA-- 734089
Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010
||||||||||| ||||| ||||| || || |||||||||||| || || | || ||
Sbjct 734088 -GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 734030
Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070
| ||| || | || ||||||||||||| ||||||||||| | | ||||||
Sbjct 734029 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 733970
Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130
|| |||||||| |||||||| | || ||||| || || ||||| || || ||||||||
Sbjct 733969 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 733910
Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190
|| ||||| ||||| || ||| | || || | || ||| ||| || || |||||
Sbjct 733909 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 733850
Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247
|| || || | |||| || |||| || ||||||||| ||||| | || ||
Sbjct 733849 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCC 733793
Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307
|||||| || || || || | ||| ||||| || ||||||||||| ||||| || || ||
Sbjct 733792 GAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 733733
Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367
|||||| | |||||| ||||||||||| || || ||||||||||||||||| |||||
Sbjct 733732 GAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 733673
Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGA 18424
||||| || | || || | | ||||| || || || || ||||| || || || ||
Sbjct 733672 TCCTTGACCGATTGGGTAGATCAAGAAA-AC--AGCAGCCGCTGCTGCAACAGGAGCTGA 733616
Query 18425 ATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCC 18484
||| |||||| |||||| || |||||||| || | ||||||||||||| | || ||
Sbjct 733615 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 733556
Query 18485 CATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTT 18544
||||||| || | || | | ||||| | ||||| || | ||| || || || ||
Sbjct 733555 CATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATT 733496
Query 18545 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 18604
|||||||| || || | || ||| |||||||| || ||||| || || | |||||| ||
Sbjct 733495 GTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCGATAGC 733436
Query 18605 GTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGA 18664
||| | || | || || || || || || ||||||||||| |||| | ||| ||
Sbjct 733435 TGCAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGA 733376
Query 18665 GACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAA 18724
||||| ||||||||||| || || || || ||||||||||||| || || || | |||
Sbjct 733375 AACAGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAA 733316
Query 18725 TGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAG 18784
| | | || |||||| || | | ||||||||| | || |||||||| || | ||| ||
Sbjct 733315 TACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAG 733256
Query 18785 GCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817
|||||| | || || || | ||||| ||| ||
Sbjct 733255 GCGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 733223
Score = 203 bits (224), Expect = 1e-47
Identities = 309/435 (71%), Gaps = 9/435 (2%)
Strand=Plus/Minus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| ||||| |||||||||||||||||||| || ||||||||||| | ||||||||
Sbjct 732828 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 732769
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950
||| | || | | |||||||| ||| | || | ||| | | | |||||
Sbjct 732768 AGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA-- 732711
Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010
||||||||||| ||||| ||||| || || |||||||||||| || || | || ||
Sbjct 732710 -GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 732652
Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070
| ||| || | || ||||||||||||| ||||||||||| | | ||||||
Sbjct 732651 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 732592
Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130
|| |||||||| |||||||| | || ||||| || || ||||| || || ||||||||
Sbjct 732591 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 732532
Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190
|| ||||| ||||| || ||| | || || | || ||| | | || || |||||
Sbjct 732531 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTTATTTTCTGTGGTTTC 732472
Query 18191 TCTAAT-AAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 18249
|| || || | | || || || | || ||||||||| ||||| | || ||||
Sbjct 732471 CCTGATCAAATTA-GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGA 732413
Query 18250 ATACCCCTGC-AACA 18263
|||| || || ||||
Sbjct 732412 ATACACCAGCTAACA 732398
>seq17466
Length=9900
Score = 347 bits (384), Expect = 4e-91
Identities = 422/568 (74%), Gaps = 13/568 (2%)
Strand=Plus/Minus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| ||||| |||||||| ||||||||||| |||||||| ||||| | ||||| ||
Sbjct 9744 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 9685
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950
||| | ||||| | |||||||| ||| | || | ||| | | | |||||
Sbjct 9684 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACA-- 9627
Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010
||||||||||| ||||||||||| || || || |||||||| || || | || ||
Sbjct 9626 -GATTGGTTGAAATTGAATCCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGT 9568
Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070
| ||| || | || |||||||||||||||||||| |||| | | |||||
Sbjct 9567 GAACCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 9508
Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130
|| |||||||| |||||||| | || ||||| || || ||||| || ||||| |||||
Sbjct 9507 GAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATA 9448
Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190
|||||||||||||| |||||||| || || | || ||||||| ||||| |||||
Sbjct 9447 AGTCTCTTCTTCTTGACCAAATTTGTAACCCTCATTAGCAGACTCATTTTCAGTGGTTTC 9388
Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247
|| || || | |||| || |||| || ||||||||| ||||| | || ||
Sbjct 9387 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 9331
Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307
|||||| || || ||||| | ||| || || |||||||||||||| ||||| || || ||
Sbjct 9330 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCCGCCTG 9271
Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367
|||||| | ||| || ||||||||||| || || | |||||||||||||||||||||
Sbjct 9270 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 9211
Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAA 18394
||||| |||| |||||||| | |||||
Sbjct 9210 TCCTTGACCAATAGGATAAATCAAGAAA 9183
Score = 181 bits (200), Expect = 3e-41
Identities = 247/345 (72%), Gaps = 0/345 (0%)
Strand=Plus/Minus
Query 18466 TAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGA 18525
|||||||||| | || ||||| ||| || | || | | ||||| | ||||| |
Sbjct 9169 TAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTA 9110
Query 18526 GTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGT 18585
| | ||| || || || || |||||||| || || | | |||||||||||| |||||||
Sbjct 9109 GCTCATAAGGACCGCCATTGTATAACCATTCATCAACAGATGCAGCTTCCCAAATTGGGT 9050
Query 18586 AGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTC 18645
| || || | ||||| || ||| | || | || || || || || || |||||||
Sbjct 9049 AAAAATGCAATCCGATCGCCGCAGAAGTAGGAATAATAGCACCAGAAATAATATTGTTTC 8990
Query 18646 CATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAG 18705
|||| ||||| | || || |||||||||||||||||||| || || || ||||||||||
Sbjct 8989 CATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGAGCAG 8930
Query 18706 CAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCC 18765
| | || || || | |||| | | || |||||| || | | ||||||||| | || |
Sbjct 8929 CGATGAAGGCGATAATAAATACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACAC 8870
Query 18766 CAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGT 18810
| ||||| || | ||| || ||||| | || || || | |||||
Sbjct 8869 CGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGT 8825
>seq14178
Length=3042336
Score = 150 bits (166), Expect = 5e-32
Identities = 231/328 (70%), Gaps = 11/328 (3%)
Strand=Plus/Plus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| ||||| |||||||||||| | ||||| || ||||||||||| || |||||
Sbjct 2899096 AGCTAGGTCTAGAGGGAAGTTATGACCTTTACGTTCATGCATAACTTCCGTACCGAGGTT 2899155
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953
||| | || | | |||||||| ||| | || | ||| || || ||
Sbjct 2899156 AGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCT-----TG-----ATAGA 2899205
Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013
||||||||| ||||| ||||| || || |||| |||||| || |||| || || |
Sbjct 2899206 TTGGTTGAAATTGAAACCATTTAGGTTGCAAGCTATAGTGCTAATACCCAAAGCAGTGAA 2899265
Query 18014 CCATAT-GCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAA 18072
||| || | | | || ||||||||||| ||||||||||| | | |||||| |
Sbjct 2899266 CCAGATACCTACTACAGGCCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTTGA 2899325
Query 18073 AGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACG 18132
|||||||| |||||||| | || ||||| || || | ||| || || |||||||| |
Sbjct 2899326 CACTAGCATATTGGAAGATCAATCAGCCAAAATAACCGTAAGCAGCTACGATATTATAAG 2899385
Query 18133 TCTCTTCTTCTTGGCCAAATTTATATCC 18160
| ||||| ||||| || ||| | || ||
Sbjct 2899386 TTTCTTCCTCTTGACCGAATCTGTAACC 2899413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151272399206400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |