Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5781 113 5e-20 seq18882 107 2e-18 seq18338 100 3e-16 seq23040 95.1 1e-14 seq22035 86.0 7e-12 >seq5781 Length=108451 Score = 113 bits (124), Expect = 5e-20 Identities = 245/365 (67%), Gaps = 4/365 (1%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || ||||| || || ||| || || || |||||| | ||| ||||| Sbjct 97916 CCAGGAACCGGGAAGACTCTTCTTGCCAAGGCAATTGCTGGTGAAGCCGGTGTTCCATTT 97857 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | | | ||||| ||||||||||||||||| ||||| || || Sbjct 97856 TTCTCCATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTAGGTGCATCTAGAGTC 97797 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| || | | ||| || ||| || || ||||| || | ||||| ||| Sbjct 97796 CGAGATCTTTTCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTATTTGTGGATGAAATT 97737 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAAC 175552 ||||| || || | ||| | | |||| | | | | || ||||| |||||||| | Sbjct 97736 GATGCCGTTGGAAGACAAAGAGGAACTGGAATTGGAGG--AGGGAATGATGAGAGAGAGC 97679 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGG 175612 |||| |||| || || | || || |||||||| ||||| | | ||||| || | | Sbjct 97678 AAACCCTTAACCAGCTTTTGACGGAAATGGATGGTTTTGAGGGTAATACTGGTATCATTG 97619 Query 175613 TTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTT 175672 | ||||| || ||||| | | ||| || |||||| ||| | | | ||||| |||| Sbjct 97618 TGATTGCTGCAACTAACAGAGCGGACATTCTTGATTCTGCCTTATTAAGGCCGGGACGTT 97559 Query 175673 TTGAT 175677 ||||| Sbjct 97558 TTGAT 97554 >seq18882 Length=869960 Score = 107 bits (118), Expect = 2e-18 Identities = 178/256 (70%), Gaps = 7/256 (3%) Strand=Plus/Minus Query 64975 GAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAA 65034 |||||||| | | ||| | |||||| |||| || || || | | ||||| || | Sbjct 814476 GAAAAGAATCGTCTCTTTCACGCCATCGAAACGGTTCCCTGCGTCGCAAAGAAAGCCACG 814417 Query 65035 TGGGCAATGAAATGGTTTGACACAAAGTCTCGCT--CCTTCGCCGAGCGCCTTTTTGCGT 65092 ||||| | || ||| | ||| | |||| | ||||||||| | | | |||| Sbjct 814416 TGGGCGTTAAATTGGATCGAC-----GGCTCGGAGACTTTCGCCGAGAGATTAATCGCGT 814362 Query 65093 TTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGA 65152 |||| || |||||||| || |||||||| ||| || ||||| || | |||| | || | Sbjct 814361 TTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGGCTCAAAA 814302 Query 65153 AGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTC 65212 |||| || | ||||| || || |||||||| || | || || ||||||||||||| Sbjct 814301 AGCGAGGGTTAATGCCGGGATTAACATTCTCAAACGAGTTGATCTCGCGAGATGAGGGTC 814242 Query 65213 TCCACCAGGAGTTTGC 65228 ||||| || ||||| Sbjct 814241 TCCACTGCGATTTTGC 814226 >seq18338 Length=6336 Score = 100 bits (110), Expect = 3e-16 Identities = 169/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||| | ||| | || ||||||||| ||||||||||||||| | ||| || | || | Sbjct 1712 CGGGATTTTGACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAG 1771 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | | |||| || ||| | ||||| ||| |||| | || || || Sbjct 1772 G-TCCAAGGGAAGGTTGTAGAAAGGCCTCAGCATATGTTGATGAGGGTTTCTATTGGAAT 1830 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| || |||||||| | | | |||||| | | |||||||||| | ||| Sbjct 1831 TCACAAGGATGATATTGATTCCGCTATTAAAACATACCATATGATGTCCCAAAGATGGTT 1890 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG--ATGTCCAGT 75364 || || ||| | || || || || |||||||| || ||||| || ||| |||| ||| Sbjct 1891 CACCCATGCATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCAGGCATGTTTAGT 1950 Query 75365 T 75365 | Sbjct 1951 T 1951 >seq23040 Length=7163423 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 14/213 (7%) Strand=Plus/Minus Query 175385 CTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCT 175444 ||||| || | ||||| ||| ||||||||||||| || || || || | ||| | | Sbjct 911438 CTGCCTCAGAGTTTGTCGAGTTGTTTGTTGGTGTTGGCGCTTCCAGAGTGAGGGATTTGT 911379 Query 175445 TTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTGATGAGATTGATGC 175499 |||| | ||| ||||| | ||||||||||| || |||||||| |||||||| Sbjct 911378 TTGAGAAGGCC-----AAATCGAAGGCGCCATGTATTGTGTTTATTGATGAAATTGATGC 911324 Query 175500 GGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACA 175557 ||||| | ||| | | || || | | | | || ||| || || ||||| || || Sbjct 911323 TGTGGGGAGGCAGAGAGGAGCAGGGCTTGGAGG--AGGAAACGATGAAAGAGAGCAGACT 911266 Query 175558 ATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 |||||||| || | || || |||||||||||| Sbjct 911265 ATTAATCAGCTTTTGACTGAAATGGATGGCTTT 911233 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 75136 TGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGG 75195 ||| |||| ||| ||||| ||||||||||||||| | || ||| | | || || Sbjct 4861300 TGACTTTGATTATTTTGGCTTCAAAACCCTTGAGAGGTCGTACCTTTTGAAGATGGACGG 4861241 Query 75196 CATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGA 75255 | | | |||| ||||| ||||||| ||| |||| | | || || ||| || Sbjct 4861240 TAGAGTTGTAGAAAGGCCACAACACATGTTGATGAGGGTTTCTGTTGGTATTCACAAAGA 4861181 Query 75256 AGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGC 75315 |||| |||||||| || | |||||| | |||||| || | | ||| ||| || Sbjct 4861180 TGACACTGATTCTGCTCTGAAAACATACCATTTGATGTCTCAGCATTGGCTCACTCATGC 4861121 Query 75316 AACACCAACCCTCTTCAATGCTGGTACACCA 75346 || |||||||| |||||||| ||||| ||| Sbjct 4861120 TACTCCAACCCTTTTCAATGCAGGTACTCCA 4861090 >seq22035 Length=61329 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 ||||| | ||| | || ||| ||||| |||||||||| |||| | ||| |||| || Sbjct 16766 CGGGATTTTGACTATGATTATTTTGGCTTCAAAACCCTGGAGAGGTCCTACCTCTTGAAG 16825 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | || | || | | | |||| || || | ||||| ||| |||| || | || Sbjct 16826 G--TCCAAGGAAAAGTTGTAGAAAGACCTCAACATATGTTGATGAGGGTTGCTGTTGGGT 16883 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 | ||| ||| ||||||||||||| | | |||||| | | |||||| ||| | || Sbjct 16884 TGCACAAGGATGACATTGATTCTGCTATCAAAACATACCATATGATGTCTCAACGATGGT 16943 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 | | || ||| | || || || || |||||||| |||||||| || ||| Sbjct 16944 TTACCCATGCATCTCCCACACTTTTTAATGCTGGAACACCAAGGCCCCAG 16993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596378697728000