Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq5785 122 2e-22 seq4300 118 2e-21 seq3274 96.9 6e-15 >seq5785 Length=266748 Score = 122 bits (134), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||||| |||| || | |||| || || ||| || Sbjct 166292 ATTTGCATACCACCACGAAGACGAAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTG 166351 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | || | | ||| |||| || ||||| |||||||| | |||||| || Sbjct 166352 TAGTCAGCAAGGGTACGACCATCTTCTAGCTGCTTTCCAGCAAAAATCAGTCTCTGCTGG 166411 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || || || ||||| || ||||| | || | ||| ||| ||||| ||| Sbjct 166412 TCAGGTGGGATGCCCTCCTTATCCTGAATTTTAGCCTTGACATTGTCAATTGTATCAGAA 166471 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||||||| | || ||||||||||| || || ||||| ||||| || |||||| Sbjct 166472 CTCTCAACTTCCAAGGTGATAGTTTTACCAGTGAGAGTTTTCACAAAGATCTGCATT 166528 Score = 122 bits (134), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||||| |||| || | |||| || || ||| || Sbjct 167565 ATTTGCATACCACCACGAAGACGAAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTG 167624 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | || | | ||| |||| || ||||| |||||||| | |||||| || Sbjct 167625 TAGTCAGCAAGGGTACGACCATCTTCTAGCTGCTTTCCAGCAAAAATCAGTCTCTGCTGG 167684 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || || || ||||| || ||||| | || | ||| ||| ||||| ||| Sbjct 167685 TCAGGTGGGATGCCCTCCTTATCCTGAATTTTAGCCTTGACATTGTCAATTGTATCAGAA 167744 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||||||| | || ||||||||||| || || ||||| ||||| || |||||| Sbjct 167745 CTCTCAACTTCCAAGGTGATAGTTTTACCAGTGAGAGTTTTCACAAAGATCTGCATT 167801 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| |||| || | || | ||| || ||| || |||||| Sbjct 167343 ATACCACCACGAAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCG 167402 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| |||| || || || ||||| || | ||||| || ||||| Sbjct 167403 GCAAGGGTACGACCATCTTCTAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGC 167462 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | ||| | ||| ||||||||| ||| |||| Sbjct 167463 GGGATGCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCA 167522 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||| || || || || || || || || || ||||| |||||||| Sbjct 167523 ACTTCTAAGGTAATGGTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 167572 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || |||| || | || | ||| || || || ||||| Sbjct 171449 ATACCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGTATGTTGTAGTCA 171508 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || | |||||| || ||||| || |||||||| ||||||||| Sbjct 171509 GCTAGAGTTCGGCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGA 171568 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || || | || | ||| ||| || || || ||| Sbjct 171569 GGGATGCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCAATTGTGTCAGAGCTTTCA 171628 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||||||||||||||| || || ||||| ||||| || ||||| Sbjct 171629 ACCTCCAAAGTTATAGTTTTACCGGTAAGGGTTTTCACAAAAATCTGCAT 171678 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| |||| ||| | || | ||| || || || ||||| Sbjct 242885 ATACCACCACGGAGACGAAGCACCAAATGGAGGGTTGACTCCTTCTGTATGTTGTAGTCA 242944 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || | |||||| |||||||| ||||| |||||||||||||| Sbjct 242945 GCAAGAGTACGACCATCTTCAAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGT 243004 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || || || || || | || | ||| || || || || ||| Sbjct 243005 GGGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCA 243064 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||||||||| ||||| || || ||||| ||||| || ||||| Sbjct 243065 ACCTCCAAAGTTATAGTCTTACCGGTCAGGGTTTTCACAAAAATCTGCAT 243114 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| || | |||||| |||| || | || | || || ||||||||||| Sbjct 243569 ATACCACCCCTGAGTCGAAGGACCAAGTGGAGCGTTGATTCCTTCTGGATATTATAGTCA 243628 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || | ||||| || ||||| || | ||||| ||||| || Sbjct 243629 GCAAGTGTGCGACCATCCTCGAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGT 243688 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || |||| ||||| ||| ||| || ||||| ||| Sbjct 243689 GGGATCCCTTCCTTGTCCTGGATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCA 243748 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| || || || || || ||||| ||||| |||||||| Sbjct 243749 ACCTCAAGGGTTATTGTCTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 243798 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| |||| || | || | ||| || ||| || ||||| Sbjct 166070 ATACCACCACGAAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCA 166129 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| |||| || || || ||||| || | ||||| || ||||| Sbjct 166130 GCAAGGGTACGACCATCTTCTAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGC 166189 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | ||| | ||| ||||||||| ||| |||| Sbjct 166190 GGGATGCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCA 166249 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||| || || || || || || || || || ||||| |||||||| Sbjct 166250 ACTTCTAAGGTAATGGTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 166299 >seq4300 Length=903212 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || ||||| || || | || | |||||| ||||||||||| | ||||| | Sbjct 818378 CGGAGTACAAGGTGAAGAGTTGACTCTTTCTGGATATTATAGTCAGCCAACGTACGGCCG 818319 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||| || |||||||| || ||||| |||||||| || || || || || || Sbjct 818318 TCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGCGGGATCCCCTCCTTG 818259 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| ||| | ||| ||| ||||| ||| ||| || || ||||| || Sbjct 818258 TCTTGGATCTTGGCTTTGACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATC 818199 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| ||||| || || || ||||| Sbjct 818198 GTCTTCCCAGTTAGGGTTTTGACGAAGATCTGCAT 818164 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| ||||| || ||||| |||||||| || || || || || || Sbjct 755827 TCTTCCAATTGTTTTCCTGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCCTCCTTG 755768 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | ||| ||||||||| ||| ||| || || ||||| || Sbjct 755767 TCTTGGATCTTGGCCTTGACATTATCAATAGTATCTGAACTCTCCACCTCGAGAGTGATC 755708 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| ||||| || || || ||||| Sbjct 755707 GTCTTCCCAGTTAGGGTTTTGACGAAGATCTGCAT 755673 >seq3274 Length=969234 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || ||||| || || | | ||| ||||||||||| || ||||| |||||||| || Sbjct 910491 TGCTTCCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATCCCTTCCTTATCTTGAATC 910432 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| ||||||||||| ||||| || || || || || ||||| Sbjct 910431 TTGGCCTTAACATTGTCGATAGTATCGGAGCTTTCAACCTCAAGGGTGATCGTCTTACCC 910372 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || ||||| ||||| Sbjct 910371 GTTAGGGTTTTAACGAATATCTGCAT 910346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899366510592000