Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5781 129 2e-24 seq3588 127 6e-24 seq14178 120 9e-22 seq23040 113 1e-19 seq18338 98.7 3e-15 seq22035 89.7 2e-12 seq3662 87.8 5e-12 >seq5781 Length=108451 Score = 129 bits (142), Expect = 2e-24 Identities = 316/470 (67%), Gaps = 18/470 (4%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTG---CTTAAATCCA 288945 || || |||||||| ||||| || | |||| ||| | || | || ||| ||| Sbjct 97591 ATGTCCGCTCTGTTAGTTGCAGCAATCACAATGATAC---CAGTATTACCCTCAAAACCA 97647 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| || |||| || ||||| ||||| || || |||||||| |||| || Sbjct 97648 TCCATTTCCGTCAAAAGCTGGTTAAGGGTTTGCTCTCTCTCATCATTCCCTCCTCC--AA 97705 Query 289006 TCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACAC 289065 | | | | ||| || | || ||||| ||||||||||| || | || | | || Sbjct 97706 TTCC---AGTTCCTCTTTGTCTT-CCAACGGCATCAATTTCATCCACAAATACAATGCAA 97761 Query 289066 GGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAA 289123 |||| ||| | | | || ||| ||| | |||| || | ||||| || | ||||| Sbjct 97762 GGAGCATTCTCTTTGGCCTTCTTGAAAAGA--TCTCGGACTCTAGATGCACCTACACCAA 97819 Query 289124 CATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCT 289182 || |||| || ||||| |||||| | |||| | || | |||| ||| ||||| || Sbjct 97820 CAAACATCTCAACAAACTCAGAACCTGATA-TGGAGAAAAATGGAACACCGGCTTCACCA 97878 Query 289183 GCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCC 289242 || | |||| | || ||||| ||||| || ||||| || || || ||| ||||| ||| Sbjct 97879 GCAATTGCCTTGGCAAGAAGAGTCTTCCCGGTTCCTGGAGGACCAACTAGAAGAACACCC 97938 Query 289243 TTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATT 289302 ||||| | || ||| ||| || || ||||||| |||| | || || || | | Sbjct 97939 TTTGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTGAGGAACTCCACCACT 97998 Query 289303 TCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| | || | |||||| |||||| ||| || |||||| |||| || Sbjct 97999 TCCATGAAATCTTGTTTTGCTTCATCAACTCCGGCAACATCATCAAATGT 98048 >seq3588 Length=1046219 Score = 127 bits (140), Expect = 6e-24 Identities = 224/324 (69%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC- 289088 || || ||||| ||||| ||||| || |||| || || ||||| | || | ||| Sbjct 142964 CCCACTGCATCTATTTCATCAATAAACATCAAGCATGGCGAATTC-GCCTTGGCCTTGTT 143022 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || |||||||| | || ||||| | ||||||| |||| || | || || || | Sbjct 143023 AAACAAATCTCTTACTCTTGAAGCTCCTACACCAACAAACATCTCAATGAACTCCGATCC 143082 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | || || | || |||||| || |||| ||| | |||| || ||||| Sbjct 143083 TGACAGAGAAAAAAAGGGAACCCCTGCTTCTCCAGCTATGGCCTTAGCCAACAGCGTCTT 143142 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 ||||| || ||||| || ||||||||||||| ||||| | |||||| ||| | | Sbjct 143143 TCCTGTCCCTGGTGGCCCAACTAATAGAACTCCTTTTGGAATTTTTGCACCAACTGCAGC 143202 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 | ||||||| || ||| | |||| ||||| || | || || | ||||| ||||| Sbjct 143203 AAATTTCTCTGGTGTCTGAAGGAATTGCACAATCTCTTGAAAATCTTGCTTTGCTTCATC 143262 Query 289329 ACATCCTGCTACATCAGCAAAAGT 289352 | ||| || |||||| |||| || Sbjct 143263 AACTCCAGCAACATCATCAAATGT 143286 >seq14178 Length=3042336 Score = 120 bits (132), Expect = 9e-22 Identities = 216/313 (69%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| || |||||||| ||| | | || | ||| || || ||||| ||| || || Sbjct 2698976 CATTATATCTTCCATTGCCTTCACCAGCCGCCTCTGGATGTATCCAGTCTCAGAAGTCTT 2698917 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || |||||||| ||||| | | |||||||||||||||||| || | ||| | || Sbjct 2698916 CACTGCAGTATCAATAAGACCTTCCCTACCACCCATAGCATGGAAAAAGAACTCCTGAGG 2698857 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 ||||| | | | ||| |||| || || || || || ||| || || Sbjct 2698856 GGTCAGCCCACGCAGGTACGAGTTCTCCACAAACCCTCGACTTTCTGGCCCATAATCATC 2698797 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CATAGCCGTATGGGATACGCTTTCCATCAA 302803 || ||||| || |||| |||| | ||| || | || |||||||||||||||| || | Sbjct 2698796 TTTAGTAAAATGAGGCAATGTCC-GATCTACAAACCCAAATGGGATACGCTTTCCCTCCA 2698738 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 | |||||||| |||| || | | ||||||| || ||||| | ||| || ||||| | Sbjct 2698737 CATTCTGCTGCCCCACACAAGCAGTCATCTGTGATATATTGATGAAACTTCCTTTGGATC 2698678 Query 302864 CAGCATTTACCAT 302876 |||| | ||||| Sbjct 2698677 CAGCTGTCACCAT 2698665 >seq23040 Length=7163423 Score = 113 bits (124), Expect = 1e-19 Identities = 280/418 (67%), Gaps = 14/418 (3%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || |||| ||||||| || || || |||||||| ||| || Sbjct 911233 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCTCC 911292 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAA 289056 || || | | |||||| | | | || |||||||||||||| ||||| || Sbjct 911293 TCC--AAGCCCT------GCTCCTCTCTGCCTCCCCACAGCATCAATTTCATCAATAAAC 911344 Query 289057 ATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCA 289116 | | ||| || | || | | || | |||| || || || || | ||| || ||| Sbjct 911345 ACAATACATGGCGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGAAGCGCCA 911404 Query 289117 AGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGC 289175 | ||||||| ||| || ||||| || || || | || ||| | |||| || || Sbjct 911405 ACACCAACAAACAACTCGACAAACTCTGAGGCAGC-ACATGAGAAAAATGGCACGCCGGC 911463 Query 289176 TTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 ||| || || |||||||| |||| | || || || ||||| ||||| || |||||| Sbjct 911464 TTCTCCAGCAACTGCCCTAGCCAATAAAGTTTTCCCAGTTCCTGGTGGCCCAACTAATA- 911522 Query 289236 AACTCCCTTTGGTACTTTT-GCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATT 289294 ||| |||||| | | | || || || || | || || || ||| | |||| ||| | Sbjct 911523 AACACCCTTTTGGAATCTTAGCACCCAAAGCTGTGTACTTATCGGGGTTTTTTAGAAAAT 911582 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | || | ||| | | ||| ||||||| | |||| || || ||||||||||| || Sbjct 911583 CAACTACTTCTTGTAATTCCAATTTTGCTTGATCAGCACCAGCCACATCAGCAAATGT 911640 Score = 93.3 bits (102), Expect = 1e-13 Identities = 171/250 (68%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 156046 AACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || |||| ||||||||||| ||| ||||| ||||| |||||||| | ||| || || Sbjct 4860720 AAGTACCCTTCCTCTTGCCTCCCCCTTGATCAACATATCGAGCAGTGTCATTAAACACTT 4860779 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 ||||| || | ||| |||||||||| ||||| ||||| | || | || || | Sbjct 4860780 GGAGCATCGGGACAATGCCATTGGAAGATCCATTTGTTCCATGGATGTAACTGCCTGAGG 4860839 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 || ||||||||||| || ||||| || || | |||| ||| ||| || | Sbjct 4860840 CACGGACATTATGAATGGAGAGACCAATTCCTCCAGCTGATTTGCTAATGATAGCACACT 4860899 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282 |||| | |||| | || |||||||| ||||||| ||| | | ||| |||| Sbjct 4860900 CCTTCAGGGTATCATATATGCCTTCAATGCTGTCATCTTTCATGCACAAAAGAAAGCAGC 4860959 Query 156283 AACTTAATTG 156292 |||||| || Sbjct 4860960 TACTTAACTG 4860969 >seq18338 Length=6336 Score = 98.7 bits (108), Expect = 3e-15 Identities = 157/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 156044 AAAACTACCATTCCTCTTGCCA---CCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 |||| |||| || ||||||||| |||||||| ||||| || ||||| | ||| || || Sbjct 2278 AAAAATACCCTTTCTCTTGCCACCTCCCTGATCCACATAACGGGCAGTATCATTAAACAC 2219 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 | ||||| || | ||| |||||||| || || || ||||| ||||||| |||| Sbjct 2218 CCGCAGCATTGGGACAATGCCATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGT 2159 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCA 156220 || |||| || |||| | |||||||| || | |||| || ||| || Sbjct 2158 TGCACGAATGTTGTGAACCGAGACACCAATACCTCCAGCTGATTTGCTGATAACAGCACA 2099 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| | ||| | | || ||||||||| |||||||| ||| Sbjct 2098 CTCCTTCAAAGTTTCATAGATTCCTTCAATACTATCATCTTTCAT 2054 >seq22035 Length=61329 Score = 89.7 bits (98), Expect = 2e-12 Identities = 154/223 (69%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 156046 AACTACCATTCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || |||| |||||||| ||| || ||||| ||||| || ||||| | ||| || || | Sbjct 17365 AATTACCTTTCCTCTTGCCGCCTCCTTGATCAACATAACGGGCAGTATCATTAAACACGC 17306 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 ||||| || | ||||||||| || || ||||| ||||| ||||||| || | | Sbjct 17305 GCAGCATTGGCACAATACCATTAGATGTCCCATTTGTTCCCCGAATATAACTTCCTGTCG 17246 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 |||| || |||| | |||||||| || | |||| || ||| || | Sbjct 17245 CACGAATGTTGTGAACTGAGACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACT 17186 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 |||| | ||||| | || ||||||||| |||||||| ||| Sbjct 17185 CCTTCAAAGTATCATATATTCCTTCAATACTATCATCTTTCAT 17143 >seq3662 Length=1964220 Score = 87.8 bits (96), Expect = 5e-12 Identities = 304/467 (65%), Gaps = 13/467 (3%) Strand=Plus/Minus Query 288882 GTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTT--A 288939 |||||| ||||| | ||||||||| | || | |||||||| |||| | || | Sbjct 247705 GTCTAAAATATCTGGTCTGTTTGTGCCAGCAAGTACAACAACTCCAGCGGT--GGTTCCA 247648 Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 ||||||||||| | | | |||||||| || ||| | |||||||| ||| Sbjct 247647 AATCCATCCATCTCTACAAGCAACTGATTAAGAGTACTTTCACGCTCATCATTGCCACCA 247588 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 ||| || | | |||| | ||||| ||||| || || |||||||| | Sbjct 247587 ---GAAAAGCCTCCACGACCCCTTGCTCGACCAATTGCATCTATCTCATCAATGAATACA 247531 Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 | || || | | ||||| || | ||| || | ||| | |||| |||| Sbjct 247530 ATACTAGGTGCACACTGTCTTGCTTCTTGAAACAAGCTCCGTACTCTAGATGGCCCAACT 247471 Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGA--TACTTGAATGAATGTTACATTTGCTT 289177 |||||| ||||||| | ||| || || | || |||| | ||| | ||| || | Sbjct 247470 CCAACAAACATTTCCATAAAATCTGACCCAGACATACTG--AGGAAAGGCACACCTGACT 247413 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || |||| | || ||||||||||| ||||| ||||| || || | | || Sbjct 247412 CACCAGCAGTTGCCTTTGCAAGAAGTGTCTTCCCTGTGCCAGGAGGGCCTACAAGAAGTG 247353 Query 289238 CTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296 | || ||||| | ||| || |||||| || ||| || | ||| |||| | || | | Sbjct 247352 CACCTTTTGGAATTTTCGCTCCCAGCTC-CTCATACTTTTTTGGGTTCTTCAGGAAGTGT 247294 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| ||| || ||| | || ||||||||||| || |||||||| Sbjct 247293 ACAAACTCCATAATTTCTTGCTTAGCCTCATCACAGCCAGCTACATC 247247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471334843827200