Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq18882 205 1e-46 seq20901 185 1e-40 seq14178 96.9 4e-14 seq23336 93.3 5e-13 seq22494 91.5 2e-12 seq21444 91.5 2e-12 seq9433 91.5 2e-12 seq5352 91.5 2e-12 seq13259 87.8 2e-11 >seq18882 Length=869960 Score = 205 bits (226), Expect = 1e-46 Identities = 213/274 (78%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| |||||||| ||||||||||| ||||| | | |||| || || ||| Sbjct 814523 GAGTGGATGTTCTCAATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGG 814582 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||| ||||||||| |||||| ||||||||| |||||||||||| ||||||||| Sbjct 814583 ACCTCCGTCATGAACCTGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAG 814642 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || |||||| ||| ||||| |||||| || | || | | |||||||| || Sbjct 814643 AAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGG-CG 814701 Query 869813 GTG-TC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | | || ||| || || || ||||| |||||||| | ||| || ||||| || |||| Sbjct 814702 GAGATCTTGCG-AAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGT 814760 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 |||| ||||| | ||| |||| | || ||||| Sbjct 814761 ACATTTCCCAAATTTGTGGGTACTGAATCGGGAA 814794 Score = 104 bits (114), Expect = 3e-16 Identities = 166/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||| | || ||||| ||||||||||| || ||||| ||||| || ||||| || Sbjct 814283 CCCGGCATTAACCCTCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 814342 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||| ||| ||||| |||| | | |||||| || || || ||| | Sbjct 814343 ATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCGGCGAAAGTCTCCGAGCC------G 814396 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| || | |||||| ||| || || || | || ||||| ||||||||| Sbjct 814397 TCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTTTCGATGGCG 814456 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 ||||||| | | ||||||| | | || |||| || || || | || ||||| || Sbjct 814457 TGAAAGAGACGATTCTTTTCGTCGGAGTTTTTGATGTAAGTTTCTAGAAGCAGCGAGTA 814515 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAA 1592244 || ||||| ||||| |||||||| | |||| || |||| ||| | |||| || || Sbjct 216618 GCTGCCAATTACCTGAACATCAAGAGTTTGCTGGA-CTTGACCTGCCAAACTGTTGCAAA 216676 Query 1592245 CATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||||||| || | || |||||||||||||||||||| ||||||||| Sbjct 216677 CATGATCAAGGGGAAAACTCCAGAGGAGATCCGCAAGACCTTCAACATCAAG 216728 >seq20901 Length=225483 Score = 185 bits (204), Expect = 1e-40 Identities = 219/294 (74%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||| ||||||||||| ||||| | | |||| | |||||| Sbjct 70914 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGG 70973 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| | | || ||||| ||| ||||| || || ||||||||| Sbjct 70974 ACTTCTTTCATGAACCTGGCAGCGAGGTTTTCGAGGACGATTCCATCCGAGGCGGCGAAG 71033 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| |||| ||||| ||||||| || | || || |||| ||| | Sbjct 71034 AAGGCGAGCACGTGAGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGATTCCCACTGGCGG 71093 Query 869813 GTGT-CGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 ||| | ||| ||||| |||||||| || ||||| | || || ||||| || ||||| Sbjct 71094 ATGTCCTGCG-ACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTA 71152 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 ||| ||||| | || | |||| |||| || || | | || |||| ||||| Sbjct 71153 CATTTCCCAGATTTCCGGGTACTGGATTGGAAACATGCAGAATCGGTCTGGGTT 71206 Score = 129 bits (142), Expect = 7e-24 Identities = 195/278 (70%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||| | ||||| |||| || || ||||| | |||||||| Sbjct 70635 CCTTCGTCTCGCGAGATTAGCTCGTTTGAGAAGGTTAGCCCCGGCATTAACCCGCGCTTT 70694 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || | |||||| || ||||||||||||||||||||||| || || || ||| ||||| Sbjct 70695 TTTAACCAAAATATCGCGCAGAAACTGCCCGAGAAAAATATCCCTTCCACGCAAGCAAAC 70754 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | || || | ||| || || || || ||| || |||||| || | ||||| Sbjct 70755 GCTATCAGTCTCTCCGCGAATGTCTCCGAGCC------GTCGATCCAATTTAGGGCCCAA 70808 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 ||||||||| | || |||||||||| || | ||||||||| | | || ||||||| Sbjct 70809 TCGGCCTTTCTGGCAACGCACGGCACCGTTTCAAAGGCGCGAAATAAGCGGCTCTTTTCG 70868 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 | | || ||| | || || || | |||||||| || Sbjct 70869 TCGGAGTTCTTTATGTACGTTTCTAGAAGGAGCGAGTA 70906 >seq14178 Length=3042336 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| |||||||| ||||| || ||| ||| || |||| || || Sbjct 2540833 GCAGCAAACTACCTGAACATCAAGGGGCTGCTGGACCTTACCTGCCAGACTGTTGCTGAC 2540892 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || |||||||| || |||||||||||||||||| Sbjct 2540893 ATGATCAAGGGAAAGACTCCGGAGGAGATTCGAAAGACCTTTAACATCAAG 2540943 >seq23336 Length=1024205 Score = 93.3 bits (102), Expect = 5e-13 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 || |||||||| || | | || ||||||||||| ||||||||| |||| || ||| Sbjct 70461 ACGCTCTTTGACCTGTTAATGGCAGCCAACTACCTGGACATCAAGAGCTTGCTGGA-CTT 70403 Query 1592225 GGG-TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGAC 1592283 | ||| | |||| || ||||||||||||||||||| || || ||||||||| |||| Sbjct 70402 GCTCTGCCAAACTGTTGCTGACATGATCAAGGGCAAGTCTCCTGAAGAGATCCGCCAGAC 70343 Query 1592284 CTTTAACATCAAG 1592296 ||| ||||| || Sbjct 70342 CTTCCACATCCAG 70330 >seq22494 Length=2402091 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAA 1592244 || ||||| ||||| |||||||| | |||| || |||| ||| | |||| || || Sbjct 1300483 GCTGCCAATTACCTGAACATCAAGAGTTTGCTGGA-CTTGACCTGCCAAACTGTTGCAAA 1300541 Query 1592245 CATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||||||| || | || |||||||||||||||||||| ||||||||| Sbjct 1300542 CATGATCAAGGGGAAAACTCCAGAGGAGATCCGCAAGACCTTCAACATCAAG 1300593 >seq21444 Length=5001191 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAA 1592244 || ||||| ||||| |||||||| | |||| || |||| ||| | |||| || || Sbjct 4514522 GCTGCCAATTACCTGAACATCAAGAGTTTGCTGGA-CTTGACCTGCCAAACTGTTGCAAA 4514464 Query 1592245 CATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||||||| || | || |||||||||||||||||||| ||||||||| Sbjct 4514463 CATGATCAAGGGGAAAACTCCAGAGGAGATCCGCAAGACCTTCAACATCAAG 4514412 >seq9433 Length=1466450 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG-GGTGCAAGTCTGTGGCCAA 1592244 || ||||||||||| |||||||| | |||| || |||| ||| | | || || | Sbjct 283989 GCAGCCAACTACCTAAACATCAAGAGTTTGCTGGA-CTTGACCTGCCAAACCGTTGCAGA 284047 Query 1592245 CATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||||||| ||| | || |||||||||||||||||||| ||||||||| Sbjct 284048 CATGATCAAGGGGAAGACTCCAGAGGAGATCCGCAAGACCTTCAACATCAAG 284099 >seq5352 Length=2537747 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAA 1592244 || ||||| ||||| |||||||| | |||| || |||| ||| | |||| || || Sbjct 1304650 GCTGCCAATTACCTGAACATCAAGAGTTTGCTGGA-CTTGACCTGCCAAACTGTTGCAAA 1304592 Query 1592245 CATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||||||| || | || |||||||||||||||||||| ||||||||| Sbjct 1304591 CATGATCAAGGGGAAAACTCCAGAGGAGATCCGCAAGACCTTCAACATCAAG 1304540 >seq13259 Length=3177564 Score = 87.8 bits (96), Expect = 2e-11 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAA 1592244 || ||| | ||||| |||||||| | |||| || |||| ||| | |||| || || Sbjct 1338470 GCTGCCTATTACCTGAACATCAAGAGTTTGCTGGA-CTTGACCTGCCAAACTGTTGCAAA 1338412 Query 1592245 CATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||||||| ||| | || ||| |||||||||||||||| ||||||||| Sbjct 1338411 CATGATCAAGGGGAAGACTCCAGAGCAGATCCGCAAGACCTTCAACATCAAG 1338360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105038344115200