Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5785 95.1 1e-14 seq23635 93.3 3e-14 seq4300 89.7 4e-13 >seq5785 Length=266748 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| | || ||||| ||||||||| | ||| ||| | Sbjct 166299 ATGCAAATCTTTGTTAAGACTCTTACTGGCAAGACCATTACCTTAGAAGTTGAGAGTTCG 166240 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | | || ||| |||||| ||||| |||||| | || || || Sbjct 166239 GATACTATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGCATCCCGCCTGACCAG 166180 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| ||||| ||||| || |||| | || | || || |||||| Sbjct 166179 CAGAGGCTTATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGTACCCTTGCTGACTACAAC 166120 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || || || | ||| ||||| Sbjct 166119 ATTCAGAAGGAGTCCACCCTTCACTTGGTG 166090 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| | || ||||| ||||||||| | ||| ||| | Sbjct 167572 ATGCAAATCTTTGTTAAGACTCTTACTGGCAAGACCATTACCTTAGAAGTTGAGAGTTCG 167513 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | | || ||| |||||| ||||| |||||| | || || || Sbjct 167512 GATACTATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGCATCCCGCCTGACCAG 167453 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| ||||| ||||| || |||| | || | || || |||||| Sbjct 167452 CAGAGGCTTATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGTACCCTTGCCGACTACAAC 167393 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || || || | ||| ||||| Sbjct 167392 ATTCAGAAGGAGTCCACCCTTCACTTGGTG 167363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 || || |||||| | || ||||| || || | |||| ||| || || ||||| || Sbjct 165750 GATAAGGAAGGCATTCCACCAGATCAGCAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAA 165691 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| || || | || || ||||||||||| || ||||| || ||||| ||||||| Sbjct 165690 GATGGGAGGACCCTTGCAGACTACAACATTCAGAAGGAATCCACATTGCATTTGGTGTTG 165631 Query 110486 AGACTGCGAGGGGGAA 110501 |||||||| || |||| Sbjct 165630 AGACTGCGTGGAGGAA 165615 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 ||||| || || | |||| ||| || || ||||| || |||| || || | || || Sbjct 167002 GATCAGCAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGAC 166943 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||| || ||||| || ||||| ||||||| |||||||| || |||| Sbjct 166942 TACAACATTCAGAAGGAATCCACATTGCATTTGGTGTTGAGACTGCGTGGAGGAA 166888 >seq23635 Length=3246295 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| |||||| | || |||||| || ||| | |||| ||| ||||||||| |||| Sbjct 165632 GACAAGGAAGGCATTCCTCCGGATCAGCAGAGATTGATTTTTGCTGGTAAACAGTTGGAA 165691 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||||| | || ||||| ||||||||||| || || || | ||| |||| | Sbjct 165692 GATGGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCGACACTTCACTTGGTCCTG 165751 Query 110486 AGACTGCGAGGGGGAA 110501 || ||| | || |||| Sbjct 165752 AGGCTGAGGGGAGGAA 165767 >seq4300 Length=903212 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| |||||||| ||||| | |||||||| || || ||| ||||| |||| Sbjct 850355 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 850414 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || ||||| ||||| || || | || ||| Sbjct 850415 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGAC 850474 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | ||| || || || || || || | | | || |||| |||||| Sbjct 850475 CAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTAC 850534 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||||||||| || ||||| | || | || || || || |||| Sbjct 850535 AACATTCAAAAAGAATCCACTTTGCATCTTGTCCTCAGGCTTCGTGGTGGAA 850586 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || |||||| | ||||||||||| ||||| ||||| ||| | Sbjct 739820 ATGCAGATCTTCGTGAAAACTCTTACCGGCAAAACTATTACTCTCGAAGTCGAGAGCTCC 739879 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | ||||| ||||| ||||| || || | || ||| ||| Sbjct 739880 GACACCATCGACAACGTAAAGGCCAAGATCCAAGACAAGGAGGGAATTCCGCCGGACCAA 739939 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || || ||||| ||||| | | | || |||| ||||||||| Sbjct 739940 CAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGATTACAAC 739999 Query 110453 ATTCAAAAAGAATCTAC 110469 || || || || || || Sbjct 740000 ATACAGAAGGAGTCAAC 740016 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/209 (69%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-- 110327 || ||||| || || || ||||| ||||||||||||| || || ||||| |||| Sbjct 755442 AATATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACAATCACTCTCGAAGTGGAGAGC 755501 Query 110328 -CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 ||||| || ||| | | || || ||||| ||||| || || | || | Sbjct 755502 TCTGAC---ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCTCCG 755558 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 ||||| || | ||||| | || || || || || || |||| | | || |||| ||| Sbjct 755559 GATCAGCAGCGTCTTATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCTTGGCCGAT 755618 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCA 110475 |||||||| ||||||||||| || ||||| Sbjct 755619 TACAACATCCAAAAAGAATCCACCTTGCA 755647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412712793420800