Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03]
25,600 sequences; 315,806,082 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq5785 104 2e-17
seq23635 93.3 3e-14
seq3274 91.5 1e-13
seq4300 86.0 5e-12
>seq5785
Length=266748
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| ||||| || ||| | || ||||| ||||||||| | ||| ||| |
Sbjct 166299 ATGCAAATCTTTGTTAAGACTCTTACTGGCAAGACCATTACCTTAGAAGTTGAGAGTTCG 166240
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|||||| | | | | || ||| |||||| || || |||||| | || || |||
Sbjct 166239 GATACTATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGCATCCCGCCTGACCAG 166180
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| ||||| | ||| ||||| ||||| || || | || | || |||||||||
Sbjct 166179 CAGAGGCTTATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGTACCCTTGCTGACTACAAC 166120
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||||| |||||||| || | ||| |||||
Sbjct 166119 ATTCAGAAGGAGTCCACCCTTCACTTGGTG 166090
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| ||||| || ||| | || ||||| ||||||||| | ||| ||| |
Sbjct 167572 ATGCAAATCTTTGTTAAGACTCTTACTGGCAAGACCATTACCTTAGAAGTTGAGAGTTCG 167513
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|||||| | | | | || ||| |||||| || || |||||| | || || |||
Sbjct 167512 GATACTATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGCATCCCGCCTGACCAG 167453
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| ||||| | ||| ||||| ||||| || || | || | || |||||||||
Sbjct 167452 CAGAGGCTTATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGTACCCTTGCCGACTACAAC 167393
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||||| |||||||| || | ||| |||||
Sbjct 167392 ATTCAGAAGGAGTCCACCCTTCACTTGGTG 167363
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||||||||| || ||| | || || ||||| || || | || ||| |
Sbjct 165843 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCG 165784
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | || || ||||| ||||| |||||| | || ||||||
Sbjct 165783 GACACCATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAAGGCATTCCACCAGATCAG 165724
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| | |||| ||| || || ||||| || || | | || | || |||||||||
Sbjct 165723 CAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGACTACAAC 165664
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784
||||| ||||| || || ||||| ||||||||||| |||| || ||||
Sbjct 165663 ATTCAGAAGGAATCCACATTGCATTTGGTGTTGAGACTGCGTGGAGGAA 165615
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||||||||| || ||| | || || ||||| || || | || ||| |
Sbjct 167116 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCG 167057
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | || || ||||| ||||| || ||| | || ||||||
Sbjct 167056 GACACCATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGATCAG 166997
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| | |||| ||| || || ||||| || || | | || | || |||||||||
Sbjct 166996 CAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGACTACAAC 166937
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784
||||| ||||| || || ||||| ||||||||||| |||| || ||||
Sbjct 166936 ATTCAGAAGGAATCCACATTGCATTTGGTGTTGAGACTGCGTGGAGGAA 166888
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614
|||||| || ||||| |||||| | || || ||||| || ||| | ||| ||| |
Sbjct 166528 AATGCAGATCTTTGTGAAAACTCTCACTGGTAAAACTATCACCTTGGAAGTTGAGAGTTC 166469
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| | | | | || || || ||| ||||| || ||| | || || ||
Sbjct 166468 TGATACAATTGACAATGTCAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCTGACCA 166409
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||||||||| |||| ||| || || ||||| || || | || | || ||||||||
Sbjct 166408 GCAGAGACTGATTTTTGCTGGAAAGCAGCTAGAAGATGGTCGTACCCTTGCTGACTACAA 166349
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|||||| ||||| ||||| | ||| |||||
Sbjct 166348 CATTCAGAAGGAATCTACCCTTCACTTGGTG 166318
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614
|||||| || ||||| |||||| | || || ||||| || ||| | ||| ||| |
Sbjct 167801 AATGCAGATCTTTGTGAAAACTCTCACTGGTAAAACTATCACCTTGGAAGTTGAGAGTTC 167742
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| | | | | || || || ||| ||||| || ||| | || || ||
Sbjct 167741 TGATACAATTGACAATGTCAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCTGACCA 167682
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||||||||| |||| ||| || || ||||| || || | || | || ||||||||
Sbjct 167681 GCAGAGACTGATTTTTGCTGGAAAGCAGCTAGAAGATGGTCGTACCCTTGCTGACTACAA 167622
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|||||| ||||| ||||| | ||| |||||
Sbjct 167621 CATTCAGAAGGAATCTACCCTTCACTTGGTG 167591
>seq23635
Length=3246295
Score = 93.3 bits (102), Expect = 3e-14
Identities = 104/139 (75%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708
|| || |||||| | || ||||||||||||| | |||| ||| ||||||||| ||||
Sbjct 165632 GACAAGGAAGGCATTCCTCCGGATCAGCAGAGATTGATTTTTGCTGGTAAACAGTTGGAA 165691
Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
|| | || ||| | || || || ||||||||||||||||| || | ||| |||| ||
Sbjct 165692 GATGGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCGACACTTCACTTGGTCCTG 165751
Query 107769 AGATTGCGAGGGGGAAATA 107787
|| || | || |||| ||
Sbjct 165752 AGGCTGAGGGGAGGAACTA 165770
>seq3274
Length=969234
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|||||||| || || || ||||| |||| ||||| ||||||||| ||||| ||| |
Sbjct 909887 AAAATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACCCTCGAAGTCGAGAGT 909946
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
||| || ||| | | || || ||||| || || ||||| | || |||
Sbjct 909947 TCCGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGAC 910006
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
|||||||| || || | || || || || || ||||||| | || |||| || |||
Sbjct 910007 CAGCAGAGGCTGATCTTCGCTGGAAAGCAACTCGAGGACGGCCGCACCTTGGCTGATTAC 910066
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| || ||||||||||| ||| | ||| | |||
Sbjct 910067 AATATCCAAAAGGAGTCGACGCTTCACCTCGTG 910099
>seq4300
Length=903212
Score = 86.0 bits (94), Expect = 5e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| ||||| ||||| ||| | || || ||||| ||||| | || |||| |||
Sbjct 850814 ATGCAGATTTTCGTCAAGACTCTTACTGGGAAAACAATTACTCTGGAGGTGGAGAGCTCT 850873
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| | | | | || || |||||| ||||| ||||| | || |||||
Sbjct 850874 -GATACCATTGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGGATTCCACCTGATCA 850932
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| || || | ||| || || ||||| ||||| | | ||| | || || || ||
Sbjct 850933 GCAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGAACTTTAGCTGATTATAA 850992
Query 107735 CATTCAAAAGGAGTCTACG 107753
||||||||||||||| |||
Sbjct 850993 CATTCAAAAGGAGTCCACG 851011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398752350438400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |