Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03]
25,600 sequences; 315,806,082 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq5785 100 4e-16
seq4300 91.5 2e-13
seq23635 87.8 3e-12
>seq5785
Length=266748
Score = 100 bits (110), Expect = 4e-16
Identities = 147/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||| | || ||||||||||| ||| |||| |||||| |
Sbjct 171449 TGCAGATTTTTGTGAAAACCCTCACGGGAAAAACAATCACTCTTGAGGTAGAAAGCTCTG 171390
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||| ||| ||||| ||| || || || || ||||| ||||| |
Sbjct 171389 ACACCATTGACAATGTGAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAGC 171330
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || ||||||||||| || || || | || ||| || || | |||| ||||| |
Sbjct 171329 AGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAACA 171270
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| || |||||||| ||| |||| || ||
Sbjct 171269 TTCAGAAAGAATCCACTCTCCACTTGGT 171242
Score = 96.9 bits (106), Expect = 5e-15
Identities = 146/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||| | || ||||||||||||||| |||| || ||| | |
Sbjct 242885 TGCAGATCTTTGTGAAAACGCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTCTG 242826
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || || | || || ||| ||||| ||| || || || || ||||| ||||| |
Sbjct 242825 ACACCATCGACAACGTGAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAGC 242766
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || ||||||||||| || || || | || ||| || || | |||| ||||| |
Sbjct 242765 AGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAACA 242706
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| || |||||||| ||| |||| || ||
Sbjct 242705 TTCAGAAAGAATCCACTCTCCACTTGGT 242678
Score = 87.8 bits (96), Expect = 3e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | || || | || ||||||||||| ||| | || ||||| | |
Sbjct 165842 TGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCGG 165783
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||| || || || ||| ||| |||||||||||||| ||||| |
Sbjct 165782 ACACCATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAAGGCATTCCACCAGATCAGC 165723
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | ||||||||||| || || | || ||| || || | |||| || || |
Sbjct 165722 AGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGACTACAACA 165663
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242
| || || ||||| || | ||||| || ||
Sbjct 165662 TTCAGAAGGAATCCACATTGCATTTGGTGTT 165632
Score = 84.2 bits (92), Expect = 3e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | || || | || ||||||||||| ||| | || ||||| | |
Sbjct 167115 TGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCGG 167056
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||| || || || ||| ||| || ||||||||||| ||||| |
Sbjct 167055 ACACCATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGATCAGC 166996
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | ||||||||||| || || | || ||| || || | |||| || || |
Sbjct 166995 AGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGACTACAACA 166936
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242
| || || ||||| || | ||||| || ||
Sbjct 166935 TTCAGAAGGAATCCACATTGCATTTGGTGTT 166905
>seq4300
Length=903212
Score = 91.5 bits (100), Expect = 2e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | || || | || || |||||||||||| | || || || |
Sbjct 850815 TGCAGATTTTCGTCAAGACTCTTACTGGGAAAACAATTACTCTGGAGGTGGAGAGCTCTG 850874
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| | ||||| || ||| || || ||| ||||| |||||||| ||||| |
Sbjct 850875 ATACCATTGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGGATTCCACCTGATCAGC 850934
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || ||||| ||||| || || || | || ||| |||| ||| | |||||||| |
Sbjct 850935 AGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGAACTTTAGCTGATTATAACA 850994
Query 146212 TACAAAAAGAATCGACTATCCAT 146234
| ||||| || || || |||||
Sbjct 850995 TTCAAAAGGAGTCCACGCTCCAT 851017
Score = 86.0 bits (94), Expect = 1e-11
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | ||||| |||| || || || || ||| | || || || | |
Sbjct 755674 TGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCAG 755733
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| | ||||| || || || ||| || || || || ||||| |||||||
Sbjct 755734 ATACTATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCACCAGATCAAC 755793
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | || |||||||| |||||||| || || | ||||| | || || || |
Sbjct 755794 AAAGATTGATCTTTGCAGGAAAACAATTGGAAGACGGCCGCACGTTGGCTGACTACAACA 755853
Query 146212 TACAAAAAGAATCGACT 146228
| || ||||| || |||
Sbjct 755854 TCCAGAAAGAGTCAACT 755870
Score = 86.0 bits (94), Expect = 1e-11
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | ||||| |||| || || || || ||| | || || || | |
Sbjct 818165 TGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCAG 818224
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| | ||||| ||| || || ||| || || || || || || |||||||
Sbjct 818225 ATACGATTGATAATGTCAAAGCCAAGATCCAAGACAAGGAGGGGATCCCGCCAGATCAAC 818284
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | || ||||| ||||| ||||| || || | ||||| | || |||||||
Sbjct 818285 AAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGCCGTACGTTGGCTGACTATAATA 818344
Query 146212 TACAAAAAGAATCGACT 146228
| || ||||| || |||
Sbjct 818345 TCCAGAAAGAGTCAACT 818361
>seq23635
Length=3246295
Score = 87.8 bits (96), Expect = 3e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186
|| ||||||||||| || ||||| || ||| | |||||||| |||||||| || || |||
Sbjct 165635 AAGGAAGGCATTCCTCCGGATCAGCAGAGATTGATTTTTGCTGGTAAACAGTTGGAAGAT 165694
Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGAC 146227
|||||| | |||||||||| || ||||| || |||||
Sbjct 165695 GGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCGAC 165735
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 785914826752000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |