Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3274 105 4e-18 seq4300 102 5e-17 seq5785 100 2e-16 >seq3274 Length=969234 Score = 105 bits (116), Expect = 4e-18 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| |||| ||| ||||||| ||| ||||| || || || ||| Sbjct 910812 AAAATCTGCATGCCACCCCTCAGACGCAACACCAGATGAAGAGTTGATTCCTTCTGAATG 910753 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | ||| || | | | || ||||| || || ||||| || |||||||||||| Sbjct 910752 TTGTAATCCGCGAGCGTCCTTCCATCCTCCAACTGCTTGCCGGCGAAGATCAAACGCTGC 910693 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 ||||| | || | ||||| ||||| ||| || | | |||| ||| | ||| || Sbjct 910692 TGATCCGGTGGAATCCCTTCCTTGTCCTGAATCTT-GGCCTTGACATTGTCAATGGTATC 910634 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || | ||||| || || || || || || || || || |||||||| Sbjct 910633 CGAACTCTCCACCTCCAGGGTGATAGTCTTCCCGGTCAAAGTCTTGACGAAAATCTGCAT 910574 Query 33750 A 33750 | Sbjct 910573 A 910573 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || ||||| ||||||| || || || | || || | || || ||||| || Sbjct 910536 TCTTTCTGGATGTTATAATCGGCCAGAGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAG 910477 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| |||||||||||| | || | ||||| || || ||| || | | ||||| Sbjct 910476 ATCAGACGCTGCTGATCAGGAGGAATCCCTTCCTTATCTTGAATCTT-GGCCTTAACATT 910418 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | || ||| ||| || |||| |||||||| ||||| |||| ||||| || Sbjct 910417 GTCGATAGTATCGGAGCTTTCAACCTCAAGGGTGATCGTCTTACCCGTTAGGGTTTTAAC 910358 Query 33738 AAAGATCTGCAT 33749 || |||||||| Sbjct 910357 GAATATCTGCAT 910346 >seq4300 Length=903212 Score = 102 bits (112), Expect = 5e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||| ||| ||||||| ||| ||||| ||| || || ||||||||||| | Sbjct 850813 ACCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGC 850754 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | | || |||| || || |||||||| |||| ||||||||||| | || Sbjct 850753 AAGCGTCCTTCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGTGG 850694 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| ||||| || | || | ||| | |||||| ||| | Sbjct 850693 GATCCCTTCCTTGTCCTGGATTTT-TGCCTTGACGTTGTCAATGGTGTCAGAGCT---CT 850638 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | |||||||| || || || | ||||| || ||||||||||| Sbjct 850637 CGACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 850586 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 ||||||||| | | ||| | || | || |||||| ||| ||||| ||||||||||| Sbjct 192003 GTCACCACCACGGAGACGGAGGACAAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAATC 191944 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 || ||| || || | || || | || || ||||| || || | | |||||| || | Sbjct 191943 GGCGAGAGTCCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGG 191884 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATT 33697 || | || |||||||| ||| ||| ||| || | ||| | |||||| | Sbjct 191883 AGGAATCCCCTCTTTGTCCTGAATCTTCGCCTTC-ACGTTGTCGATCGTGTCGGAGCTCT 191825 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | |||||||| || || || ||||| || || ||||||||||| Sbjct 191824 CCACCTCCAGAGTGATCGTCTTCCCGGTCAACGTCTTGACGAAGATCTGCAT 191773 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| ||| | ||| | ||| || || ||| ||||| ||||||||||||| Sbjct 191771 CCTCCCCTCAGACGCAGCACAAGATGGAGCGTCGACTCCTTTTGGATGTTGTAATCGGCC 191712 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| |||| |||| || || ||||| || || | | |||||| || | || Sbjct 191711 AAGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGA 191652 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || ||| || | ||| | ||||||| ||||| Sbjct 191651 ATCCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTGTCGATGGTGTCGGAGCTCTCCAC 191593 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||||| || || || | || || |||||||||||||| Sbjct 191592 CTCCAGAGTGATCGTCTTCCCGGTCAGGGTCTTGACAAAGATCTGCAT 191545 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| | |||| |||||||| ||||||||||||| | ||||| |||| || | ||| Sbjct 850561 ATGCAAAGTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTG 850502 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || |||||||| || | ||||||||| || |||| | || || ||||| || || Sbjct 850501 CTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTT 850442 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | | || | ||| | ||||||| ||||| || | ||||| || || || | Sbjct 850441 -GGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGG 850383 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | ||||| ||||| |||||||| Sbjct 850382 TGAGGGTTTTCACAAATATCTGCAT 850358 >seq5785 Length=266748 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | |||| || || ||| ||| || || ||||| || |||| Sbjct 167802 CCACCCCTTAGACGGAGGACCAGGTGGAGTGTGGACTCCTTCTGAATGTTATAGTCGGCA 167861 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | |||||| || |||||||| | | ||||| ||| | || Sbjct 167862 AGGGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGG 167921 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| || ||| | ||| |||| |||||| |||||| Sbjct 167922 ATTCCTTCCTTGTCCTGAATCTTGGCTTTGA-CATTGTCAATAGTGTCGGAGCTTTCCAC 167980 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| ||||| || || | || |||||||||||||||||| Sbjct 167981 CTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTTACAAAGATCTGCATA 168029 Score = 100 bits (110), Expect = 2e-16 Identities = 169/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| || | ||| | |||||||| || || || || || ||| Sbjct 243104 AAAATCTGCATGCCACCCCTGAGACGGAGGACCAAATGAAGGGTTGATTCCTTCTGGATG 243163 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || | || |||||| | || || | |||||| || ||||| || | | ||| Sbjct 243164 TTGTAGTCTGCAAGGGTGCGTCCATCCTCTAGTTGTTTACCAGCAAAGATGAGCCTTTGC 243223 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC 33689 || ||| | || | ||||| || || |||||| ||| | ||| |||| |||||| Sbjct 243224 TGGTCTGGTGGGATCCCTTCCTTATCCTGAATTTTGGCTTTGA-CATTGTCAATGGTGTC 243282 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||||| |||| ||||| || || || || | || ||||||||||||||||| Sbjct 243283 GGAGCTTTCCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 243342 Query 33750 A 33750 | Sbjct 243343 A 243343 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||||| || ||||| || || | || || | | | || || Sbjct 242678 ACCAAGTGGAGAGTGGATTCTTTCTGAATGTTATAGTCTGCAAGAGTCCTTCCATCTTCA 242737 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||| |||||||| | | |||||||||| | || | ||| || ||||| | Sbjct 242738 AGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTGA 242797 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| ||||| | | ||| | |||||| ||| || |||| || || ||||| Sbjct 242798 ATTTTGGCTTTCA-CGTTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAATTGTTTT 242856 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | |||||| ||||||||||||||| Sbjct 242857 TCCGGTGAGCGTTTTCACAAAGATCTGCATA 242887 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||| || || ||||| ||||| | Sbjct 243343 ACCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGC 243402 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||| |||||||| || | | |||||| ||| | || Sbjct 243403 AAGTGTGCGACCATCCTCGAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGG 243462 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC---GCTTGATT 33697 | ||||| ||||| ||| || ||||| ||| |||| |||||| |||| | Sbjct 243463 GATCCCTTCCTTGTCCTGAATCTTGGCTTTCA-CATTGTCAATGGTGTCCGAGCTT---T 243518 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| |||| || || || || || || | || |||||||||||||||||| Sbjct 243519 CCACCTCAAGAGTAATTGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATA 243571 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || || | ||| | |||||||| || || || || || |||||||| || | Sbjct 171679 ACCCCCCCTGAGACGAAGTACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGC 171738 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| | || || | |||||| || ||||| || | | ||||| ||| | || Sbjct 171739 AAGTGTGCGTCCATCCTCAAGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGG 171798 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC---GCTTGATT 33697 | ||||| || || |||||| ||| ||||| |||| |||||| |||| | Sbjct 171799 GATCCCTTCCTTATCCTGAATTTTGGCTTT-AACATTGTCAATGGTGTCCGAGCTT---T 171854 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||| ||||| || || || || | || ||||||||||| ||||| Sbjct 171855 CCACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 171906 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||| || || || ||| || ||||||||||| || | Sbjct 171451 ACCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGTATGTTGTAGTCAGC 171510 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | |||||| || ||||| ||||| | ||||||||| | || Sbjct 171511 TAGAGTTCGGCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGG 171570 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| ||| || | | |||| ||| | ||||| ||| || Sbjct 171571 GATGCCTTCCTTGTCCTGAATCTT-AGCCTTGACATTGTCAATTGTGTCAGAGCT---TT 171626 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || |||||||| || | ||||| ||||| ||||||||| Sbjct 171627 CAACCTCCAAAGTTATAGTTTTACCGGTAAGGGTTTTCACAAAAATCTGCATA 171679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328601444352000