Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03]
25,600 sequences; 315,806,082 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq20901 111 1e-19
seq5785 89.7 5e-13
seq4300 82.4 7e-11
>seq20901
Length=225483
Score = 111 bits (122), Expect = 1e-19
Identities = 344/520 (66%), Gaps = 22/520 (4%)
Strand=Plus/Minus
Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCC 46817
||||| |||||| || ||||||| | |||||| | || |||||||| || | |
Sbjct 70834 GTGCCGTGCGTTGCCAGAAAGGCCGATTGGGCCCTAAATTGGATCGACGGCTCG---GAG 70778
Query 46818 ACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT 46877
|| | || ||| | || | || || || || ||||| | ||||| |||||||||
Sbjct 70777 ACATTCGCGGAGAGACTGATAGCGTTTGCTTGCGTGGAAGGGATATTTTTCTCGGGCAGT 70718
Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937
|| ||| || |||| | |||| || |||||||||| || || ||| |||
Sbjct 70717 TTCTGCGCGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCGGGGCTAACCTTCTCAAAC 70658
Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACG 46997
||| | |||||||| ||||||||||| ||| || || ||||| | | |||| |
Sbjct 70657 GAGCTAATCTCGCGAGACGAAGGACTCCACTGCGATTTCGCGTGCTTGTTGTACAGCTTG 70598
Query 46998 CGCGTGAATGAGAAATTAAACTCGGA-CACGATCCTGAGCATGTTTAGGGAGGCGGTGAG 47056
| ||| | ||||||| | ||| | || | | | || | | ||||||||||
Sbjct 70597 C---TGAGGAACAAATTAAGCGAGGAGCGCG-TGAAGGGGATAGTGAAGGAGGCGGTGGA 70542
Query 47057 CATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCCGTCGCCTTGCTGGGCATGAACGCA 47114
|| || | |||||| | |||| |||||||| ||| ||| |||| |||||||
Sbjct 70541 GATAGAGAGGGAGTTCGT--GTGCGACGCGCTGCCGTGCGCATTGGTGGGGATGAACGGG 70484
Query 47115 CAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTT-GGTGCAGCTCGGACA 47173
|| ||| | | || || ||||||||||| ||| | |||| ||||| ||| ||
Sbjct 70483 GCGTTGATGAGTCAGTACATAGAGTTTGTGGCAGATAGGTTGTTGGGTGC-GCT-GGGGT 70426
Query 47174 ACCGAAATATTTTAATGCT----CGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCG 47229
| | || | | | | | || ||||||||||| | ||| | ||||||||
Sbjct 70425 GCGGGAAGGTGT--ACGGTGTGACG-AATCCGTTTGATTGGATGGAGTTGATTTCGCTTC 70369
Query 47230 AGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269
| || || || ||||| || ||||| ||||||| || ||
Sbjct 70368 AAGGGAAGACGAATTTCTTTGAGAAGAGAGTCGGGGAATA 70329
>seq5785
Length=266748
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
||||| || | | | ||||| || ||||||||||||||| | |||||| ||||||
Sbjct 167364 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTACGACCATCTTCT 167423
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
||||| ||||| | | |||| || | ||| || || || || |||||||| || || |
Sbjct 167424 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGA 167483
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
|| || ||| | | || | |||||| | ||| ||||| | || | || ||
Sbjct 167484 ATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATGGTCTTG 167543
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| ||||| || | || || |||||
Sbjct 167544 CCAGTAAGAGTCTTAACAAAGATTTGCAT 167572
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
||||| || | | | ||||| || |||||||||||||| | |||||| ||||||
Sbjct 166091 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGACCATCTTCT 166150
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
||||| ||||| | | |||| || | ||| || || || || |||||||| || || |
Sbjct 166151 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGA 166210
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
|| || ||| | | || | |||||| | ||| ||||| | || | || ||
Sbjct 166211 ATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATGGTCTTG 166270
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| ||||| || | || || |||||
Sbjct 166271 CCAGTAAGAGTCTTAACAAAGATTTGCAT 166299
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
||||| || | | | || || || |||||||||||||| | |||||| ||||||
Sbjct 166319 ACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGACCATCTTCT 166378
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
||||| || || | | | || || | ||| || || || || ||||| || ||||| |
Sbjct 166379 AGCTGCTTTCCAGCAAAAATCAGTCTCTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGA 166438
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
||||| || | | || | ||||| | ||| ||||| | || | ||||||
Sbjct 166439 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTCTCAACTTCCAAGGTGATAGTTTTA 166498
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| |||||||| | || ||||||||
Sbjct 166499 CCAGTGAGAGTTTTCACAAAGATCTGCAT 166527
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
||||| || | | | || || || |||||||||||||| | |||||| ||||||
Sbjct 167592 ACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGACCATCTTCT 167651
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
||||| || || | | | || || | ||| || || || || ||||| || ||||| |
Sbjct 167652 AGCTGCTTTCCAGCAAAAATCAGTCTCTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGA 167711
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
||||| || | | || | ||||| | ||| ||||| | || | ||||||
Sbjct 167712 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTCTCAACTTCCAAGGTGATAGTTTTA 167771
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| |||||||| | || ||||||||
Sbjct 167772 CCAGTGAGAGTTTTCACAAAGATCTGCAT 167800
>seq4300
Length=903212
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
|||| ||| | | | ||||||||||| |||||||| ||| || ||| || ||||||
Sbjct 818144 ACCAGATGGAGGGTGGACTCTTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCG 818085
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
|| || || |||| |||| || | ||| || || ||||| || ||||| || ||
Sbjct 818084 AGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGG 818025
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
|| || |||| | || | || |||| ||| || |||| || | ||| ||
Sbjct 818024 ATCTTGGCCTTCACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTC 817965
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| || || ||||| | ||| |||||||||
Sbjct 817964 CCGGTTAGGGTTTTGACGAAGATCTGCATG 817935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476458684416000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |