Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq20901 306 5e-77 seq18882 275 9e-68 seq5786 98.7 1e-14 >seq20901 Length=225483 Score = 306 bits (338), Expect = 5e-77 Identities = 410/563 (73%), Gaps = 12/563 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||||||||| | ||||| |||| || | |||| || |||| |||| | Sbjct 71224 GAGCCGCTGCTAACCCCGAACCCAGACCGATTCTGCATGTTTCCAATCCAGTACCCGGAA 71165 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || |||||||||||| | |||| |||| || || |||||||| || |||||||||||||| Sbjct 71164 ATCTGGGAAATGTACAAGAAAG-CCGAAGCTTCATTTTGGACGGCGGAGGAGGTCGACCT 71106 Query 1455836 CGGCGCCG-ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 | ||| | ||| ||| |||| || || | || ||||||| || ||||||| | Sbjct 71105 -GTCGCAGGACATCCGCCAGTGGGAATCCCTAACCGCCGACGAGAAACACTTCATCACTC 71047 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 |||| |||||||| || ||||||| ||||| ||||| ||| ||||| || | | | Sbjct 71046 ACGTGCTCGCCTTCTT-CGCCGCCTCGGATGGAATCGTCCTCGAAAACCTCGCTGCCAGG 70988 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || |||||||| |||||| | | ||||| ||| || ||||| ||||| ||||||||| Sbjct 70987 TTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCATC 70928 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || ||||||||||| |||| ||||||||||| | || || ||| | ||| || | | | Sbjct 70927 GAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACATAAAGAACTCCGAC 70868 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 || ||| || | | ||||||||| | || |||||||||| || | ||||||||| Sbjct 70867 GAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGTGCGTTGCCAGAAAGGCCGAT 70808 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGC 1456193 ||||| | || |||||| || ||| || || || || ||| | || | | Sbjct 70807 TGGGCCCTAAATTGGATC------GACGGCTCGGAGACATTCGCGGAGAGACTGATAGCG 70754 Query 1456194 TTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 ||||| |||| || || || ||||||||||||||||||||||| || |||||| | || Sbjct 70753 TTTGCTTGCGTGGAAGGGATATTTTTCTCGGGCAGTTTCTGCGCGATATTTTGGTTAAAA 70694 Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| | ||||| || || Sbjct 70693 AAGCGCGGGTTAATGCCGGGGCT 70671 >seq18882 Length=869960 Score = 275 bits (304), Expect = 9e-68 Identities = 406/562 (72%), Gaps = 16/562 (3%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||||| || || | | | ||||| | ||||| ||||||| || | |||| | Sbjct 814833 GAGCCGCTTCTAGCCCCAAATCCCGATCGATTTTGTA-TGTTCCCGATTCAGTACCCACA 814775 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 || |||||||||||| | |||| |||| || || ||||||||||| ||||| || || | Sbjct 814774 AATTTGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTTTGGACCGCTGAGGAAGTTGATC 814716 Query 1455835 TCGGCGCC-GA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 | ||| || | | | |||||||| | | || | || |||||| || ||| ||| Sbjct 814715 TTT-CGCAAGATCTCCG-CCACTGGGAGGCCCTAACCGCTGACGAGAAGCACTTCGTCAC 814658 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 |||||| |||||||| || ||||||| ||| |||||||| ||||||||| |||||| Sbjct 814657 GCACGTGCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGGCA 814599 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || |||| |||||||| | | ||||| ||| || ||||| ||||| ||||||| Sbjct 814598 GGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCA 814539 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 | || ||||||||||| |||| |||||||| || | || || ||| |||| || | | Sbjct 814538 TTGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAAACTCCG 814479 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 ||| ||| | | ||||||| ||||||||| ||||| || | || || || ||| Sbjct 814478 ACGAAAAGAATCGTCTCTTTCACGCCATCGAAACGGTTCCCTGCGTCGCAAAGAAAGCCA 814419 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCG 1456191 |||||| | || |||||| || ||| || ||||| |||||| | | ||| Sbjct 814418 CGTGGGCGTTAAATTGGATC------GACGGCTCGGAGACTTTCGCCGAGAGATTAATCG 814365 Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||||| |||| ||||| || || ||||| || ||||| ||||| || |||||||||| Sbjct 814364 CGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGGCTCA 814305 Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272 | ||||| || | ||||| || Sbjct 814304 AAAAGCGAGGGTTAATGCCGGG 814283 >seq5786 Length=788143 Score = 98.7 bits (108), Expect = 1e-14 Identities = 162/229 (71%), Gaps = 10/229 (4%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 |||||| || |||||||| || ||| | || | ||| |||| |||| ||||| Sbjct 312528 CAAGGTCCTGAAGCAGGTTCATCCCGATATCGGT-----ATC-TCCAGCAAGGCCATGGG 312475 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCA-TCGGCACC-GAGGCCGGTCGC 725033 ||||||||| || |||||||||| |||| | | | ||| | ||||| |||| Sbjct 312474 CATCATGAACAGTTTCATCAACGACATCTTCGA--GAAGTTGGCCCAAGAGGCGTCTCGC 312417 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || ||| | | ||||||| |||||| || | |||||||||||||||||| | Sbjct 312416 CTCGCGAGGTACAACAAGAAGCCGACGATCACGTCGAGGGAGATCCAGACCGCCGTGAGA 312357 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| ||| ||| | |||| ||||||||| || ||||| |||| Sbjct 312356 TTGGTCTTGCCCGGTGAATTAGCCAAGCACGCCGTATCGGAGGGGACCA 312308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175342032947200