Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03]
25,600 sequences; 315,806,082 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq20901 306 5e-77
seq18882 275 9e-68
seq5786 98.7 1e-14
>seq20901
Length=225483
Score = 306 bits (338), Expect = 5e-77
Identities = 410/563 (73%), Gaps = 12/563 (2%)
Strand=Plus/Minus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
||||||||||| | ||||| |||| || | |||| || |||| |||| |
Sbjct 71224 GAGCCGCTGCTAACCCCGAACCCAGACCGATTCTGCATGTTTCCAATCCAGTACCCGGAA 71165
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835
|| |||||||||||| | |||| |||| || || |||||||| || ||||||||||||||
Sbjct 71164 ATCTGGGAAATGTACAAGAAAG-CCGAAGCTTCATTTTGGACGGCGGAGGAGGTCGACCT 71106
Query 1455836 CGGCGCCG-ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894
| ||| | ||| ||| |||| || || | || ||||||| || ||||||| |
Sbjct 71105 -GTCGCAGGACATCCGCCAGTGGGAATCCCTAACCGCCGACGAGAAACACTTCATCACTC 71047
Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954
|||| |||||||| || ||||||| ||||| ||||| ||| ||||| || | | |
Sbjct 71046 ACGTGCTCGCCTTCTT-CGCCGCCTCGGATGGAATCGTCCTCGAAAACCTCGCTGCCAGG 70988
Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014
|| |||||||| |||||| | | ||||| ||| || ||||| ||||| |||||||||
Sbjct 70987 TTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCATC 70928
Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074
|| ||||||||||| |||| ||||||||||| | || || ||| | ||| || | | |
Sbjct 70927 GAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACATAAAGAACTCCGAC 70868
Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134
|| ||| || | | ||||||||| | || |||||||||| || | |||||||||
Sbjct 70867 GAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGTGCGTTGCCAGAAAGGCCGAT 70808
Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGC 1456193
||||| | || |||||| || ||| || || || || ||| | || | |
Sbjct 70807 TGGGCCCTAAATTGGATC------GACGGCTCGGAGACATTCGCGGAGAGACTGATAGCG 70754
Query 1456194 TTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252
||||| |||| || || || ||||||||||||||||||||||| || |||||| | ||
Sbjct 70753 TTTGCTTGCGTGGAAGGGATATTTTTCTCGGGCAGTTTCTGCGCGATATTTTGGTTAAAA 70694
Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275
|||||||| | ||||| || ||
Sbjct 70693 AAGCGCGGGTTAATGCCGGGGCT 70671
>seq18882
Length=869960
Score = 275 bits (304), Expect = 9e-68
Identities = 406/562 (72%), Gaps = 16/562 (3%)
Strand=Plus/Minus
Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774
|||||||| || || | | | ||||| | ||||| ||||||| || | |||| |
Sbjct 814833 GAGCCGCTTCTAGCCCCAAATCCCGATCGATTTTGTA-TGTTCCCGATTCAGTACCCACA 814775
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
|| |||||||||||| | |||| |||| || || ||||||||||| ||||| || || |
Sbjct 814774 AATTTGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTTTGGACCGCTGAGGAAGTTGATC 814716
Query 1455835 TCGGCGCC-GA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892
| ||| || | | | |||||||| | | || | || |||||| || ||| |||
Sbjct 814715 TTT-CGCAAGATCTCCG-CCACTGGGAGGCCCTAACCGCTGACGAGAAGCACTTCGTCAC 814658
Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952
|||||| |||||||| || ||||||| ||| |||||||| ||||||||| ||||||
Sbjct 814657 GCACGTGCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGGCA 814599
Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012
| || |||| |||||||| | | ||||| ||| || ||||| ||||| |||||||
Sbjct 814598 GGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCA 814539
Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072
| || ||||||||||| |||| |||||||| || | || || ||| |||| || | |
Sbjct 814538 TTGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAAACTCCG 814479
Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132
||| ||| | | ||||||| ||||||||| ||||| || | || || || |||
Sbjct 814478 ACGAAAAGAATCGTCTCTTTCACGCCATCGAAACGGTTCCCTGCGTCGCAAAGAAAGCCA 814419
Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCG 1456191
|||||| | || |||||| || ||| || ||||| |||||| | | |||
Sbjct 814418 CGTGGGCGTTAAATTGGATC------GACGGCTCGGAGACTTTCGCCGAGAGATTAATCG 814365
Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250
||||| |||| ||||| || || ||||| || ||||| ||||| || ||||||||||
Sbjct 814364 CGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGGCTCA 814305
Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272
| ||||| || | ||||| ||
Sbjct 814304 AAAAGCGAGGGTTAATGCCGGG 814283
>seq5786
Length=788143
Score = 98.7 bits (108), Expect = 1e-14
Identities = 162/229 (71%), Gaps = 10/229 (4%)
Strand=Plus/Minus
Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975
|||||| || |||||||| || ||| | || | ||| |||| |||| |||||
Sbjct 312528 CAAGGTCCTGAAGCAGGTTCATCCCGATATCGGT-----ATC-TCCAGCAAGGCCATGGG 312475
Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCA-TCGGCACC-GAGGCCGGTCGC 725033
||||||||| || |||||||||| |||| | | | ||| | ||||| ||||
Sbjct 312474 CATCATGAACAGTTTCATCAACGACATCTTCGA--GAAGTTGGCCCAAGAGGCGTCTCGC 312417
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
|| ||| | | ||||||| |||||| || | |||||||||||||||||| |
Sbjct 312416 CTCGCGAGGTACAACAAGAAGCCGACGATCACGTCGAGGGAGATCCAGACCGCCGTGAGA 312357
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| || ||| ||| ||| | |||| ||||||||| || ||||| ||||
Sbjct 312356 TTGGTCTTGCCCGGTGAATTAGCCAAGCACGCCGTATCGGAGGGGACCA 312308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7175342032947200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |