Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq20901 131 1e-25 seq18882 123 2e-23 >seq20901 Length=225483 Score = 131 bits (144), Expect = 1e-25 Identities = 387/586 (66%), Gaps = 12/586 (2%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||||||||| || || | || || ||| |||||||||| ||||| | || ||||||| Sbjct 71187 TGTTTCCAATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCTTCATTTT 71128 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG-ATTGCATTAAAACCA 43825 |||| || || || || || || | | ||| | || ||| | | | | |||| Sbjct 71127 GGACGGCGGAGGAGGTCGACCTGTCGCAGGACATCCGCCAGTGGGAATCCCT---AACCG 71071 Query 43826 C--AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 | | || ||||| || || || || | || || || || || || || || | Sbjct 71070 CCGACGAGAAACACTTCATCACTCACGTGCTCGCCTTCTTCGCCGCCTCGGATGGAATCG 71011 Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943 || ||||| | | | |||| | ||||||| ||| | | || || || | Sbjct 71010 TCCTCGAAAACCTCGCTGCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCT 70951 Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003 | || || || ||||| ||||| || || || || || ||||||||| || || ||| Sbjct 70950 TCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAG 70891 Query 44004 ATACGTACATCAAAGATGGGC-ACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 | |||||||| ||||| | |||| ||| || || ||| || | ||||| || Sbjct 70890 AAACGTACAT-AAAGAACTCCGACGAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTG 70832 Query 44063 CC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 || |||| | | | || || || |||||||| || ||||| | || | || Sbjct 70831 CCGTGCGTTGCCAGA-AAGGCCGATTGGGCCCTAAATTGGATCGACGGCTCGGAGACATT 70773 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TG 44180 | || |||| | |||||||| |||||||| || || || || || || || Sbjct 70772 CGCGGAGAGACTGATAGCGTTTGCTTGCGTGGAAGGGATATTTTTCTCGGGCAGTTTCTG 70713 Query 44181 CGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGT 44240 || | |||||||||||||| || || || || ||||| ||| | || || ||||| ||| Sbjct 70712 CG-CGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCGGGGCTAACCTTCTCAAACGAGC 70654 Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 |||| || || ||||| | || |||||||| || |||||||| Sbjct 70653 TAATCTCGCGAGACGAAGGACTCCACTGCGATTTCGCGTGCTTGTT 70608 >seq18882 Length=869960 Score = 123 bits (136), Expect = 2e-23 Identities = 382/583 (66%), Gaps = 6/583 (1%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| || ||||| || | | || ||| |||||||||| ||||| | ||||| |||| Sbjct 814796 TGTTCCCGATTCAGTACCCACAAATTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTT 814737 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAGCACATTGGATTGCATTAAAACCA 43825 |||| || || ||||||||| | | |||| || || || ||| || ||| | Sbjct 814736 GGACCGCTGAGGAAGTTGATCTTTCGCAAGATCTCCGC-CACTGGGAGGCCCTAACCGCT 814678 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 | || || || || | | || | || || || || || |||||| || ||| Sbjct 814677 GACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTC 814618 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 || || | | | |||| | || || || | | || || || || Sbjct 814617 CTCGAGAACCTCGCCGGCAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTTC 814558 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 || || || ||||| ||||| || || || || || ||||||||| || || |||| Sbjct 814557 TACGGCTTCCAAATCGCCATTGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGAA 814498 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC- 44064 || ||||||||| | |||| ||| |||| | ||| | || || ||||| || || Sbjct 814497 ACTTACATCAAAAACTCCGACGAAAAGAATCGTCTCTTTCACGCCATCGAAACGGTTCCC 814438 Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124 |||| || | ||||| ||||| | || ||||| | || |||| | Sbjct 814437 TGCGTCGCAA-AGAAAGCCACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACTTTCGC 814379 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGG 44183 || || | |||||||||| ||||| || |||||||| ||||| | |||||| Sbjct 814378 CGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCG- 814320 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 | ||||||||| | || || ||||| || ||||| || || || || ||||| ||||| | Sbjct 814319 CGATATTTTGGCTCAAAAAGCGAGGGTTAATGCCGGGATTAACATTCTCAAACGAGTTGA 814260 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 | || ||||| || | || ||||||||||| ||| |||| Sbjct 814259 TCTCGCGAGATGAGGGTCTCCACTGCGATTTTGCGTGCCTGTT 814217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397331993728000