Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq25300 118 9e-22 seq4300 118 9e-22 seq5785 105 6e-18 seq16041 98.7 8e-16 seq3592 98.7 8e-16 >seq25300 Length=5305897 Score = 118 bits (130), Expect = 9e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || |||||||| ||| ||| || |||| || ||||| || || Sbjct 1946513 GTTGACTCCTTTTGGATGTTGTAGTCAGCTAGGGTTCTGC-CGTCCTCAAGCTGCTTTCC 1946455 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | |||||||||||||| ||||| || | ||||| || || ||||||| || Sbjct 1946454 GGCGAAGATGAGACGCTGTTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTT 1946395 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||| || ||||| ||||||| || ||||| || || Sbjct 1946394 GACATTGTCGATGGTGTCCGATGATTCGACCTCTAGGGTTATAGTCTTTCCCGTTAGGGT 1946335 Query 27230 TTTCACAAAGATTTGCATAGCTGC 27253 |||||| ||||| ||||| ||||| Sbjct 1946334 TTTCACGAAGATCTGCATGGCTGC 1946311 >seq4300 Length=903212 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||| | || | || | ||| | || || || || || || ||||| ||| Sbjct 740048 TGCCTCCGCGGAGACGAAGGACAAGATGAAGGGTTGACTCCTTCTGTATGTTGTAATCGG 739989 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||| |||||||| || || || | || || | |||||| ||||||| Sbjct 739988 CCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGTTGGTCCGGCG 739929 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | | || | ||||| | | || | Sbjct 739928 GAATTCCCTCCTTGTCTTGGATCTTGGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCGA 739869 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| ||||| |||| |||||| || ||||||||||| ||||| |||||| Sbjct 739868 CTTCGAGAGTAATAGTTTTGCCGGTAAGAGTTTTCACGAAGATCTGCATA 739819 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| || || || ||||||||||| ||||| ||| || |||| |||||||||| || Sbjct 850561 ATGCAAAGTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTG 850502 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || ||||| | ||||||||||| || |||||||| | ||||| || || |||||| Sbjct 850501 CTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTT 850442 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | || | | | || | ||||| | | || ||||| || || || | ||||| || Sbjct 850441 GGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGT 850382 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 || ||||||||||| || ||||| Sbjct 850381 GAGGGTTTTCACAAATATCTGCAT 850358 >seq5785 Length=266748 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 ||||| || | ||| || || || || ||||| ||||| || || |||| | || || Sbjct 243590 ACCAAGTGGAGCGTTGATTCCTTCTGGATATTATAGTCAG-CAAGTGTGCGACCATCCTC 243648 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||||||||| || | || || | ||| ||||| || || | || || || || Sbjct 243649 GAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTG 243708 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| ||| | | || | ||||| | | |||||| || || ||||| | || Sbjct 243709 GATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTT 243768 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || ||||||||||||||||||||||| Sbjct 243769 GCCGGTGAGAGTTTTCACAAAGATTTGCAT 243798 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || ||||| ||||| || ||||| | | | | ||||| Sbjct 242678 ACCAAGTGGAGAGTGGATTCTTTCTGAATGTTATAGTCTGCAAGAGTCCTTCCATCTTCA 242737 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || ||||||| | ||| ||||| || || | |||||| || || Sbjct 242738 AGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTGA 242797 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| ||||| | | || | ||||| | |||||| || ||||| || | ||| Sbjct 242798 ATTTTGGCTTTCACGTTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAATTGTTTTT 242857 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || |||||||||||||| |||||| Sbjct 242858 CCGGTGAGCGTTTTCACAAAGATCTGCATA 242887 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || || || || ||||| | |||| | || ||| Sbjct 168048 ACCAAATGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGACCATCCTCG 168107 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||||||||| || | ||||| | || || || || || | || || ||||| | Sbjct 168108 AGCTGTTTACCAGCAAAGATGAGTCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGG 168167 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||| | | | || | ||||| | | ||| || || || ||||| | ||| Sbjct 168168 ATCTTGGCTTTTACGTTATCAATGGTGTCAGAGCTTTCGACCTCAAGGGTTATGGTCTTG 168227 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| || |||||||||||||| Sbjct 168228 CCAGTGAGAGTCTTAACAAAGATTTGCAT 168256 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || ||||| ||||| || ||||| | | | | ||||| Sbjct 171242 ACCAAGTGGAGAGTGGATTCTTTCTGAATGTTATAGTCTGCAAGAGTCCTTCCATCTTCA 171301 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || ||||||| | ||| ||||| || || | |||||| || || Sbjct 171302 AGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTGA 171361 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| ||||| | || | ||||| | | ||| || || ||||| || | ||| Sbjct 171362 ATTTTGGCTTTCACATTGTCAATGGTGTCAGAGCTTTCTACCTCAAGAGTGATTGTTTTT 171421 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| || ||||||||||| || |||||| Sbjct 171422 CCCGTGAGGGTTTTCACAAAAATCTGCATA 171451 >seq16041 Length=904 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | | || ||||||||||||| || ||| Sbjct 373 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGTCCGTCTTCGAGCTGCTTGCCG 432 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || ||||| || | ||||| || || |||||| || Sbjct 433 GCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 492 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || | ||||| | || ||||| || ||| Sbjct 493 ACGTTGTCAATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTCTTACCCGTTAGGGTT 552 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 553 TTCACGAAGATCTGCAT 569 >seq3592 Length=5743183 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | | || ||||||||||||| || ||| Sbjct 5552038 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGTCCGTCTTCGAGCTGCTTGCCG 5551979 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || ||||| || | ||||| || || |||||| || Sbjct 5551978 GCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 5551919 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || | ||||| | || ||||| || ||| Sbjct 5551918 ACGTTGTCAATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTCTTACCCGTTAGGGTT 5551859 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 5551858 TTCACGAAGATCTGCAT 5551842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424801820467200