Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5781 113 6e-20 seq18338 100 4e-16 seq18882 98.7 1e-15 seq23040 95.1 2e-14 seq22035 86.0 8e-12 >seq5781 Length=108451 Score = 113 bits (124), Expect = 6e-20 Identities = 245/365 (67%), Gaps = 4/365 (1%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||||||||| ||||| | | | ||| |||||| || ||| | | ||||| || || Sbjct 97554 ATCAAAACGTCCCGGCCTTAATAAGGCAGAATCAAGAATGTCCGCTCTGTTAGTTGCAGC 97613 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 ||| || | || ||||| | | ||||| |||||||| || || | | || |||| Sbjct 97614 AATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCCGTCAAAAGCTGGTTAAG 97673 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACC 11629 ||||| |||||||||||||| || | | | | |||| | | ||| | || || Sbjct 97674 GGTTTGCTCTCTCTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTTTGTCTTCCAACG 97731 Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||| ||||| | || ||||| || || ||| || ||| | | || ||| Sbjct 97732 GCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGA 97791 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || || || || ||||| ||||||||||||||||| ||||| | | | || Sbjct 97792 TCTCGGACTCTAGATGCACCTACACCAACAAACATCTCAACAAACTCAGAACCTGATATG 97851 Query 11750 TGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809 || ||||| ||| | |||||| || || || ||| || || ||||| || || Sbjct 97852 GAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAAGAGTCTTCCCGGTT 97911 Query 11810 CCTGG 11814 ||||| Sbjct 97912 CCTGG 97916 >seq18338 Length=6336 Score = 100 bits (110), Expect = 4e-16 Identities = 169/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 111930 aaCTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 111987 |||| |||| ||| || ||||| || |||||||| || || || || | ||| || | Sbjct 1951 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 1892 Query 111988 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 112047 |||| | |||||||||| | | |||||| | | | |||||||| || ||| ||| Sbjct 1891 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCGGAATCAATATCATCCTTGTG 1832 Query 112048 GATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAG 112107 || || || | |||| ||| ||||| | ||| || |||| | | | || | || Sbjct 1831 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGCCTTTCTACAACCTTCCCTTGGA- 1773 Query 112108 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 || || | || ||| | ||||||||||||||| ||||||||| || | ||| | |||| Sbjct 1772 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 1713 Query 112167 G 112167 | Sbjct 1712 G 1712 >seq18882 Length=869960 Score = 98.7 bits (108), Expect = 1e-15 Identities = 176/256 (69%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || |||||||||||||||||| || || | || |||||||| || || Sbjct 814226 GCAAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCC 814285 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | || ||||| || | |||| | || ||||| || ||| |||||||| || Sbjct 814286 GGCATTAACCCTCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATC 814345 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG--AGCGAGACTTTGCATCAA 122836 |||||||| || |||||||| | | | |||||||| | |||| | || | Sbjct 814346 CCCTCCACGCAAGCAAACGCGATTAATCTCTCGGCGAAAGTCTCCGAG-----CCGTCGA 814400 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 122896 ||| || | ||||| | || ||||| | | || || || |||| |||||| | || Sbjct 814401 TCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTTTCGATGGCGTGAA 814460 Query 122897 ATAACTGCTTCTTTTC 122912 | | | |||||||| Sbjct 814461 AGAGACGATTCTTTTC 814476 >seq23040 Length=7163423 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/213 (70%), Gaps = 14/213 (7%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 |||||||||||| || || | | |||||||| || || ||||| ||||| ||| || Sbjct 911233 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 911290 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | || || | | ||| | ||||| |||||||| |||||||| || |||||| Sbjct 911291 CCTCCAAGCCCTGCTCCTCTCTGCCTCCCCACAGCATCAATTTCATCAATAAACACAATA 911350 Query 11657 CATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCA 11711 ||||| | ||||| ||| | ||||| | ||| | || || || || | Sbjct 911351 CATGGCGCCTTCGATTT-----GGCCTTCTCAAACAAATCCCTCACTCTGGAAGCGCCAA 911405 Query 11712 CACCAACAAACATCTCCACAAAGTTTGCGGCAG 11744 |||||||||||| ||| ||||| | || ||||| Sbjct 911406 CACCAACAAACAACTCGACAAACTCTGAGGCAG 911438 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 111949 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTT 112008 ||| ||||| |||||||| |||||||| || || ||| ||| | | || |||||| Sbjct 4861090 TGGAGTACCTGCATTGAAAAGGGTTGGAGTAGCATGAGTGAGCCAATGCTGAGACATCAA 4861149 Query 112009 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 | |||||| | || |||||||| |||| || ||| || || | | |||| ||| Sbjct 4861150 ATGGTATGTTTTCAGAGCAGAATCAGTGTCATCTTTGTGAATACCAACAGAAACCCTCAT 4861209 Query 112069 GAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTC 112128 ||||||| ||||| |||| | | | || || | | ||| || | |||| Sbjct 4861210 CAACATGTGTTGTGGCCTTTCTACAACTCTACCGTCCATCTTCAAAAGGTACGACCTCTC 4861269 Query 112129 AAGGGTTTTGAGACCAAAGTAACCAAAATCA 112159 ||||||||||| ||||| ||| |||| ||| Sbjct 4861270 AAGGGTTTTGAAGCCAAAATAATCAAAGTCA 4861300 >seq22035 Length=61329 Score = 86.0 bits (94), Expect = 8e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || |||||||| |||||||| || || || || | ||| || | ||| | ||| Sbjct 16993 CTGGGGCCTTGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTG 16934 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| | | |||||| | | ||||||||||||| ||| ||| | || | || Sbjct 16933 AGACATCATATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGCAACCCAACAGC 16874 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 112117 |||| ||| ||||| | || || |||| | | | || | || | || |||| Sbjct 16873 AACCCTCATCAACATATGTTGAGGTCTTTCTACAACTTTTCCTTGGA--CCTTCAAGAGG 16816 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 ||| | |||| |||||||||| ||||| ||| || | ||| | ||||| Sbjct 16815 TAGGACCTCTCCAGGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCG 16766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627831029760000