Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03]
25,600 sequences; 315,806,082 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq5781 113 6e-20
seq18338 100 4e-16
seq18882 98.7 1e-15
seq23040 95.1 2e-14
seq22035 86.0 8e-12
>seq5781
Length=108451
Score = 113 bits (124), Expect = 6e-20
Identities = 245/365 (67%), Gaps = 4/365 (1%)
Strand=Plus/Plus
Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511
||||||||| ||||| | | | ||| |||||| || ||| | | ||||| || ||
Sbjct 97554 ATCAAAACGTCCCGGCCTTAATAAGGCAGAATCAAGAATGTCCGCTCTGTTAGTTGCAGC 97613
Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571
||| || | || ||||| | | ||||| |||||||| || || | | || ||||
Sbjct 97614 AATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCCGTCAAAAGCTGGTTAAG 97673
Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACC 11629
||||| |||||||||||||| || | | | | |||| | | ||| | || ||
Sbjct 97674 GGTTTGCTCTCTCTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTTTGTCTTCCAACG 97731
Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689
|||||||| ||||| | || ||||| || || ||| || ||| | | || |||
Sbjct 97732 GCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGA 97791
Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749
|| || || || ||||| ||||||||||||||||| ||||| | | | ||
Sbjct 97792 TCTCGGACTCTAGATGCACCTACACCAACAAACATCTCAACAAACTCAGAACCTGATATG 97851
Query 11750 TGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809
|| ||||| ||| | |||||| || || || ||| || || ||||| || ||
Sbjct 97852 GAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAAGAGTCTTCCCGGTT 97911
Query 11810 CCTGG 11814
|||||
Sbjct 97912 CCTGG 97916
>seq18338
Length=6336
Score = 100 bits (110), Expect = 4e-16
Identities = 169/241 (70%), Gaps = 4/241 (2%)
Strand=Plus/Minus
Query 111930 aaCTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 111987
|||| |||| ||| || ||||| || |||||||| || || || || | ||| || |
Sbjct 1951 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 1892
Query 111988 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 112047
|||| | |||||||||| | | |||||| | | | |||||||| || ||| |||
Sbjct 1891 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCGGAATCAATATCATCCTTGTG 1832
Query 112048 GATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAG 112107
|| || || | |||| ||| ||||| | ||| || |||| | | | || | ||
Sbjct 1831 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGCCTTTCTACAACCTTCCCTTGGA- 1773
Query 112108 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166
|| || | || ||| | ||||||||||||||| ||||||||| || | ||| | ||||
Sbjct 1772 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 1713
Query 112167 G 112167
|
Sbjct 1712 G 1712
>seq18882
Length=869960
Score = 98.7 bits (108), Expect = 1e-15
Identities = 176/256 (69%), Gaps = 7/256 (3%)
Strand=Plus/Plus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || |||||||||||||||||| || || | || |||||||| || ||
Sbjct 814226 GCAAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCC 814285
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
||||| | || ||||| || | |||| | || ||||| || ||| |||||||| ||
Sbjct 814286 GGCATTAACCCTCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATC 814345
Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG--AGCGAGACTTTGCATCAA 122836
|||||||| || |||||||| | | | |||||||| | |||| | || |
Sbjct 814346 CCCTCCACGCAAGCAAACGCGATTAATCTCTCGGCGAAAGTCTCCGAG-----CCGTCGA 814400
Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 122896
||| || | ||||| | || ||||| | | || || || |||| |||||| | ||
Sbjct 814401 TCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTTTCGATGGCGTGAA 814460
Query 122897 ATAACTGCTTCTTTTC 122912
| | | ||||||||
Sbjct 814461 AGAGACGATTCTTTTC 814476
>seq23040
Length=7163423
Score = 95.1 bits (104), Expect = 2e-14
Identities = 150/213 (70%), Gaps = 14/213 (7%)
Strand=Plus/Plus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
|||||||||||| || || | | |||||||| || || ||||| ||||| ||| ||
Sbjct 911233 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 911290
Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656
| | | | || || | | ||| | ||||| |||||||| |||||||| || ||||||
Sbjct 911291 CCTCCAAGCCCTGCTCCTCTCTGCCTCCCCACAGCATCAATTTCATCAATAAACACAATA 911350
Query 11657 CATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCA 11711
||||| | ||||| ||| | ||||| | ||| | || || || || |
Sbjct 911351 CATGGCGCCTTCGATTT-----GGCCTTCTCAAACAAATCCCTCACTCTGGAAGCGCCAA 911405
Query 11712 CACCAACAAACATCTCCACAAAGTTTGCGGCAG 11744
|||||||||||| ||| ||||| | || |||||
Sbjct 911406 CACCAACAAACAACTCGACAAACTCTGAGGCAG 911438
Score = 84.2 bits (92), Expect = 3e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 111949 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTT 112008
||| ||||| |||||||| |||||||| || || ||| ||| | | || ||||||
Sbjct 4861090 TGGAGTACCTGCATTGAAAAGGGTTGGAGTAGCATGAGTGAGCCAATGCTGAGACATCAA 4861149
Query 112009 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068
| |||||| | || |||||||| |||| || ||| || || | | |||| |||
Sbjct 4861150 ATGGTATGTTTTCAGAGCAGAATCAGTGTCATCTTTGTGAATACCAACAGAAACCCTCAT 4861209
Query 112069 GAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTC 112128
||||||| ||||| |||| | | | || || | | ||| || | ||||
Sbjct 4861210 CAACATGTGTTGTGGCCTTTCTACAACTCTACCGTCCATCTTCAAAAGGTACGACCTCTC 4861269
Query 112129 AAGGGTTTTGAGACCAAAGTAACCAAAATCA 112159
||||||||||| ||||| ||| |||| |||
Sbjct 4861270 AAGGGTTTTGAAGCCAAAATAATCAAAGTCA 4861300
>seq22035
Length=61329
Score = 86.0 bits (94), Expect = 8e-12
Identities = 158/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999
||| || |||||||| |||||||| || || || || | ||| || | ||| | |||
Sbjct 16993 CTGGGGCCTTGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTG 16934
Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059
|||||| | | |||||| | | ||||||||||||| ||| ||| | || | ||
Sbjct 16933 AGACATCATATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGCAACCCAACAGC 16874
Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 112117
|||| ||| ||||| | || || |||| | | | || | || | || ||||
Sbjct 16873 AACCCTCATCAACATATGTTGAGGTCTTTCTACAACTTTTCCTTGGA--CCTTCAAGAGG 16816
Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167
||| | |||| |||||||||| ||||| ||| || | ||| | |||||
Sbjct 16815 TAGGACCTCTCCAGGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCG 16766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627831029760000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |