Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5781 125 8e-24 seq23040 98.7 1e-15 seq18338 91.5 2e-13 >seq5781 Length=108451 Score = 125 bits (138), Expect = 8e-24 Identities = 308/460 (67%), Gaps = 8/460 (2%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || || | | || || || || || |||| ||||| || | | ||||| Sbjct 97584 ATCAAGAATGTCCGCTCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 97643 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| || |||||||| ||||||| ||||| || | ||||||||| || | | Sbjct 97644 ACCATCCATTTCCGTCAAAAGCTGGTTAAGGGTTTGCTCTCTCTCATCATTCCCT--CCT 97701 Query 9676 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | | |||| | | ||| |||| ||||||||||| ||||| | || || ||||| Sbjct 97702 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 97761 Query 9734 GGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||| || | | ||| ||| ||||| || || | || || |||||||| Sbjct 97762 GGAGCATTCTCTTTGGCCTTCTTGAAA-AGATCTCGGACTCTAGATGCACCTACACCAAC 97820 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | | | | || | || || || ||| | |||||| | Sbjct 97821 AAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAG 97879 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 |||| || ||| ||||||||||| || || ||||| ||| | || || |||| Sbjct 97880 CAATTGCCTTGGCAAGAAGAGTCTTCCCGGTTCCTGGAGGACCAACTAGAAGAACACCCT 97939 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTT 9971 |||||| || ||| | |||||||||| | ||| || || ||||| | || Sbjct 97940 TTGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTGAGGAACTCCACCACTT 97999 Query 9972 CTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 | || || | ||| || | |||| || ||||||| Sbjct 98000 CCATGAAATCTTGTTTTGCTTCATCAACTCCGGCAACATC 98039 >seq23040 Length=7163423 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 104197 ||||| | ||||||| ||||||||| ||||||||||||||| | || ||| | Sbjct 4861308 AGAGATTTTGACTTTGATTATTTTGGCTTCAAAACCCTTGAGAGGTCGTACCTTTTGAAG 4861249 Query 104198 CTCGATGGT-GTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | || ||| | ||| | |||| ||||| ||||||| ||| | || | | ||||| Sbjct 4861248 ATGGACGGTAGAGTTG-TAGAAAGGCCACAACACATGTTGATGAGGGTTTCTGTTGGTAT 4861190 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 ||| || |||| |||||||| || | |||||| | |||||| || | | | Sbjct 4861189 TCACAAAGATGACACTGATTCTGCTCTGAAAACATACCATTTGATGTCTCAGCATTGGCT 4861130 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 || ||| || || |||||||| |||||||| ||||| ||| ||||| Sbjct 4861129 CACTCATGCTACTCCAACCCTTTTCAATGCAGGTACTCCACAGCCCCA 4861082 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/219 (70%), Gaps = 16/219 (7%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| || |||||||| || |||||||| || || | |||||| || || Sbjct 911233 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 911290 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | | || || | | ||| | ||||| |||||||| |||||||| || || || Sbjct 911291 CCTCCAAGCCCTGCTCCTCTCTGCCTCCCCACAGCATCAATTTCATCAATAAACACAATA 911350 Query 9731 CATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCC 9784 ||||| || ||| || | ||||| | ||||| ||| || | ||||| Sbjct 911351 CATGGCGCCTTCGATTTGGCCTTC----TCAAACAAATCCCT--CACTCTGGAAGCGCCA 911404 Query 9785 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 ||||||||||||| ||| ||||| | || ||| | |||| Sbjct 911405 ACACCAACAAACAACTCGACAAACTCTGAGGCAGCACAT 911443 >seq18338 Length=6336 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 104147 GACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCTCGATGG 104205 |||| || ||| ||||| ||||||||||||||| | ||| || | || || | | || Sbjct 1721 GACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTCCAAGGG 1780 Query 104206 TGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGA 104265 ||| | |||| || ||| | ||||| ||| | || | || || ||||| ||| Sbjct 1781 AAGGTTG-TAGAAAGGCCTCAGCATATGTTGATGAGGGTTTCTATTGGAATTCACAAGGA 1839 Query 104266 AGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGC 104325 || |||||||| | | | |||||| | | |||||||||| | ||||| || || Sbjct 1840 TGATATTGATTCCGCTATTAAAACATACCATATGATGTCCCAAAGATGGTTCACCCATGC 1899 Query 104326 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 | | || || || || |||||||| || ||||| ||||| Sbjct 1900 ATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCA 1938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583074156544000