Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq20901 138 1e-27 seq18882 102 9e-17 >seq20901 Length=225483 Score = 138 bits (152), Expect = 1e-27 Identities = 377/564 (67%), Gaps = 14/564 (2%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||||||| | |||| |||| |||||||| | |||||| ||| Sbjct 71185 TTTCCAATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCTTCATTTTGG 71126 Query 59622 TCCGTCGAGGAGATTGACCT--CGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACG 59679 | | |||||| | ||||| ||| ||| | | | | ||||| || | || Sbjct 71125 ACGGCGGAGGAGGTCGACCTGTCGCAGGACATCCGCCAG--TGGGAATCCCTAACCGCCG 71068 Query 59680 ACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGA 59739 ||||| | || ||||||| || || ||||||||||| || |||||||| || Sbjct 71067 ACGAGAAACACTTCATCACTCACGTGCTCGCCTTCTTCGCCGCCTCGGATGGAATCGTCC 71008 Query 59740 TGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCT 59799 | ||||| | | | || || || ||||| | ||||||| || | |||| Sbjct 71007 TCGAAAACCTCGCTGCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCT 70948 Query 59800 ACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGAT 59858 ||| | || ||| || |||| ||||||||||| | |||||||||| | | || Sbjct 70947 ACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAA 70889 Query 59859 AAGTTGGTCAAGGATCCGGAAGAGAAG-GCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 | || | ||| | | || || ||| || | | | || || ||| | || ||| | || Sbjct 70888 ACGTACATAAAGAACTCCGACGAAAAGAGCCGCT-TATTTCGCGCCTTTGAAACGGTGCC 70830 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATT 59974 || ||| ||| || || |||||| | | ||||| || || |||| |||| Sbjct 70829 GTGC-GTTGCCAGAAAGGCCGATTGGGCCCTAAATTGGATCGACGGCTCGGAGA--CATT 70773 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | | || ||||| ||||| ||||||||||| || || ||||| ||| ||||| Sbjct 70772 CGCGGAGAGACTGATAGCGTTTGCTTGCGTGGAAGGGATATTTTTCTCGGGCAGTTTCTG 70713 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || || || ||| | |||||||| || | |||||||| || | ||||| |||||||| Sbjct 70712 CGCGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCGGGGCTAACCTTCTCAAACGAGCT 70653 Query 60095 GATTTCCCGGGACGAGGGCCTCCA 60118 || || || ||||| || ||||| Sbjct 70652 AATCTCGCGAGACGAAGGACTCCA 70629 >seq18882 Length=869960 Score = 102 bits (112), Expect = 9e-17 Identities = 489/759 (64%), Gaps = 24/759 (3%) Strand=Plus/Minus Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 |||||| |||| ||| ||| | || || ||||||||||| || || || || || Sbjct 814677 GACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTC 814618 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 | || || | | | | || | ||| |||||| | |||||||| || | ||| Sbjct 814617 CTCGAGAACCTCGCCGGCAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTTC 814558 Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857 |||| | || ||| || ||| ||||||||||| | ||||||||| | | || Sbjct 814557 TACGGCTTCCAAATCGC-CATTGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGA 814499 Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 | | |||| | | || || ||| | |||| || | ||||| || ||| | || Sbjct 814498 AACTTACATCAAAAACTCCGACGAAAAGAATCGTCTCTTTCACGCCATCGAAACGGTTCC 814439 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATT 59974 | || || | | ||||| ||||| | | ||||| || || |||| | || Sbjct 814438 CTGC-GTCGCAAAGAAAGCCACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACT--TT 814382 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | | | || || ||||| |||||||| || || |||||||| || || || Sbjct 814381 CGCCGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTG 814322 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || || || |||||||||||||| || | |||||||| | | ||||| |||||| | Sbjct 814321 CGCGATATTTTGGCTCAAAAAGCGAGGGTTAATGCCGGGATTAACATTCTCAAACGAGTT 814262 Query 60095 GATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTAT 60153 ||| || || || ||||| ||||| || ||||| ||| | | | ||| ||| Sbjct 814261 GATCTCGCGAGATGAGGGTCTCCACTGCGATTTTGC-GTGCCTGTTGTAT---AGTTTAT 814206 Query 60154 TG-GAAAAATGCCCTTCCA--AGGATATTCACAAGATTGTTCAGTGGGCTTGTGAAG-TG 60209 || | | | || | | || | | | | || || ||| ||| || | Sbjct 814205 TGAGGACGAAGCTAAGCGAGGAGCGCGTGAAGGCGTTAGTGAAGGAGGC-GGTGGAGATA 814147 Query 60210 GAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAA 60269 ||||| ||||| | || ||||| || ||| | | || ||| | ||||||| Sbjct 814146 GAGAGAGAGTTTGTGTGCGATGCGCTGCCGTGCGCGTTGGTGGGGATGAA---TGGAGAA 814090 Query 60270 ---ATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGA 60326 |||| |||||||| ||||||||||||| | | ||| | |||| | || Sbjct 814089 TTGATGAGTCAGTACATAGAGTTTGTCGCGGATAGGTTGTTGGGTGCGCTTGGGTACGGG 814030 Query 60327 CCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAG 60386 | ||||| ||| || ||||| || ||||||||| |||||| | |||||||| Sbjct 814029 AAGCTGTACGGTGTGGCGAATCCTTTTGATTGGATGGAGCTAATCTCGCTCCAAGGGAAG 813970 Query 60387 ACCAACTTCTTTGAGAAGCGGGTCGGGGATTATTCAAAG 60425 || || |||||||| ||||| || ||||| ||| |||| Sbjct 813969 ACTAATTTCTTTGAAAAGCGAGTTGGGGAATATCAAAAG 813931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548349272064000