Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03]
25,600 sequences; 315,806,082 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq20901 138 1e-27
seq18882 102 9e-17
>seq20901
Length=225483
Score = 138 bits (152), Expect = 1e-27
Identities = 377/564 (67%), Gaps = 14/564 (2%)
Strand=Plus/Minus
Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621
||||| || | ||||||||| | |||| |||| |||||||| | |||||| |||
Sbjct 71185 TTTCCAATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCTTCATTTTGG 71126
Query 59622 TCCGTCGAGGAGATTGACCT--CGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACG 59679
| | |||||| | ||||| ||| ||| | | | | ||||| || | ||
Sbjct 71125 ACGGCGGAGGAGGTCGACCTGTCGCAGGACATCCGCCAG--TGGGAATCCCTAACCGCCG 71068
Query 59680 ACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGA 59739
||||| | || ||||||| || || ||||||||||| || |||||||| ||
Sbjct 71067 ACGAGAAACACTTCATCACTCACGTGCTCGCCTTCTTCGCCGCCTCGGATGGAATCGTCC 71008
Query 59740 TGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCT 59799
| ||||| | | | || || || ||||| | ||||||| || | ||||
Sbjct 71007 TCGAAAACCTCGCTGCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCT 70948
Query 59800 ACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGAT 59858
||| | || ||| || |||| ||||||||||| | |||||||||| | | ||
Sbjct 70947 ACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAA 70889
Query 59859 AAGTTGGTCAAGGATCCGGAAGAGAAG-GCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916
| || | ||| | | || || ||| || | | | || || ||| | || ||| | ||
Sbjct 70888 ACGTACATAAAGAACTCCGACGAAAAGAGCCGCT-TATTTCGCGCCTTTGAAACGGTGCC 70830
Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATT 59974
|| ||| ||| || || |||||| | | ||||| || || |||| ||||
Sbjct 70829 GTGC-GTTGCCAGAAAGGCCGATTGGGCCCTAAATTGGATCGACGGCTCGGAGA--CATT 70773
Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034
|| | | || ||||| ||||| ||||||||||| || || ||||| ||| |||||
Sbjct 70772 CGCGGAGAGACTGATAGCGTTTGCTTGCGTGGAAGGGATATTTTTCTCGGGCAGTTTCTG 70713
Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094
|| || || ||| | |||||||| || | |||||||| || | ||||| ||||||||
Sbjct 70712 CGCGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCGGGGCTAACCTTCTCAAACGAGCT 70653
Query 60095 GATTTCCCGGGACGAGGGCCTCCA 60118
|| || || ||||| || |||||
Sbjct 70652 AATCTCGCGAGACGAAGGACTCCA 70629
>seq18882
Length=869960
Score = 102 bits (112), Expect = 9e-17
Identities = 489/759 (64%), Gaps = 24/759 (3%)
Strand=Plus/Minus
Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738
|||||| |||| ||| ||| | || || ||||||||||| || || || || ||
Sbjct 814677 GACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTC 814618
Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798
| || || | | | | || | ||| |||||| | |||||||| || | |||
Sbjct 814617 CTCGAGAACCTCGCCGGCAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTTC 814558
Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857
|||| | || ||| || ||| ||||||||||| | ||||||||| | | ||
Sbjct 814557 TACGGCTTCCAAATCGC-CATTGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGA 814499
Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916
| | |||| | | || || ||| | |||| || | ||||| || ||| | ||
Sbjct 814498 AACTTACATCAAAAACTCCGACGAAAAGAATCGTCTCTTTCACGCCATCGAAACGGTTCC 814439
Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATT 59974
| || || | | ||||| ||||| | | ||||| || || |||| | ||
Sbjct 814438 CTGC-GTCGCAAAGAAAGCCACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACT--TT 814382
Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034
|| | | | || || ||||| |||||||| || || |||||||| || || ||
Sbjct 814381 CGCCGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTG 814322
Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094
|| || || |||||||||||||| || | |||||||| | | ||||| |||||| |
Sbjct 814321 CGCGATATTTTGGCTCAAAAAGCGAGGGTTAATGCCGGGATTAACATTCTCAAACGAGTT 814262
Query 60095 GATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTAT 60153
||| || || || ||||| ||||| || ||||| ||| | | | ||| |||
Sbjct 814261 GATCTCGCGAGATGAGGGTCTCCACTGCGATTTTGC-GTGCCTGTTGTAT---AGTTTAT 814206
Query 60154 TG-GAAAAATGCCCTTCCA--AGGATATTCACAAGATTGTTCAGTGGGCTTGTGAAG-TG 60209
|| | | | || | | || | | | | || || ||| ||| || |
Sbjct 814205 TGAGGACGAAGCTAAGCGAGGAGCGCGTGAAGGCGTTAGTGAAGGAGGC-GGTGGAGATA 814147
Query 60210 GAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAA 60269
||||| ||||| | || ||||| || ||| | | || ||| | |||||||
Sbjct 814146 GAGAGAGAGTTTGTGTGCGATGCGCTGCCGTGCGCGTTGGTGGGGATGAA---TGGAGAA 814090
Query 60270 ---ATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGA 60326
|||| |||||||| ||||||||||||| | | ||| | |||| | ||
Sbjct 814089 TTGATGAGTCAGTACATAGAGTTTGTCGCGGATAGGTTGTTGGGTGCGCTTGGGTACGGG 814030
Query 60327 CCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAG 60386
| ||||| ||| || ||||| || ||||||||| |||||| | ||||||||
Sbjct 814029 AAGCTGTACGGTGTGGCGAATCCTTTTGATTGGATGGAGCTAATCTCGCTCCAAGGGAAG 813970
Query 60387 ACCAACTTCTTTGAGAAGCGGGTCGGGGATTATTCAAAG 60425
|| || |||||||| ||||| || ||||| ||| ||||
Sbjct 813969 ACTAATTTCTTTGAAAAGCGAGTTGGGGAATATCAAAAG 813931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548349272064000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |