Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03]
25,600 sequences; 315,806,082 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq20453 89.7 6e-13
seq18882 89.7 6e-13
seq25026 82.4 8e-11
seq9433 82.4 8e-11
>seq20453
Length=5924519
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 2350703 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2350762
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 2350763 TGAGCTACGAAAGC 2350776
>seq18882
Length=869960
Score = 89.7 bits (98), Expect = 6e-13
Identities = 158/228 (69%), Gaps = 12/228 (5%)
Strand=Plus/Plus
Query 74456 CTTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTT 74515
|||| ||| || || || ||||||||||| || || |||||||||| | ||||||
Sbjct 813931 CTTTTGATATTCCCCAACTCGCTTTTCAAAGAAATTAGTCTTCCCTTGGAGCGAGATTAG 813990
Query 74516 CTCCATCCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTC---TCCCCAAACTGTGC 74572
||||||||| || ||||| ||| ||||||| | ||||| | ||||| | |
Sbjct 813991 CTCCATCCAATCAAAAGGATTCGCCACACCGTACA---GCTTCCCGTACCCAAGCGCACC 814047
Query 74573 CATGAGGCGATCCGCCACAAATTGAATGTACTG---CGTCATTTCTCCCGCATCCATGCC 74629
|| | | |||||| ||||| | |||||||| | ||| ||||| ||| ||| ||
Sbjct 814048 CAACAACCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTC---CATTCATCCC 814104
Query 74630 GATGAGTTTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTC 74677
| | ||||||||| || ||| | |||||| ||||| | |||
Sbjct 814105 CACCAACGCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTC 814152
>seq25026
Length=2017250
Score = 82.4 bits (90), Expect = 8e-11
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680
|| |||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||
Sbjct 1675083 GATTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 1675142
Query 79681 AATTGAGCTACGAAAGC 79697
|| |||||||||| |||
Sbjct 1675143 AACTGAGCTACGAGAGC 1675159
>seq9433
Length=1466450
Score = 82.4 bits (90), Expect = 8e-11
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682
||||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 125088 CTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 125029
Query 79683 TTGAGCTACGAAAGC 79697
|||||||||| |||
Sbjct 125028 CTGAGCTACGAGAGC 125014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547040890880000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |