Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq4300 93.3 3e-14 seq3274 86.0 4e-12 seq5785 84.2 2e-11 >seq4300 Length=903212 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || ||||||||||| || || || || || || | || || || ||| Sbjct 850355 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 850414 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || |||| ||||| || || ||||| || || ||||| || Sbjct 850415 TCCGACACCATCGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGG 850472 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || |||||||| || ||| | || |||| |||| ||| |||||| Sbjct 850473 ACCAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATT 850532 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCAT 27993 ||||||| |||||||| |||||||||| Sbjct 850533 ACAACATTCAAAAAGAATCCACTTTGCAT 850561 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 12/198 (6%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || |||||||||||||| || ||| |||||| | || ||||| ||| || Sbjct 739820 ATGCAGATCTTCGTGAAAACTCTTACCGGCAAAACTATTACTCTCGAAGTCGAGAGCTCC 739879 Query 27850 GACGATGTACAATCGGTCAAACAAAA----AATAGCC--GACAAAGAAGGTGTTCCGATG 27903 ||| || |||| ||| ||| || | || ||||| || || ||||| | Sbjct 739880 GAC-----ACCATCGA-CAACGTAAAGGCCAAGATCCAAGACAAGGAGGGAATTCCGCCG 739933 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || || || | || ||||| ||||| || | || |||| |||| |||| ||||| Sbjct 739934 GACCAACAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGAT 739993 Query 27964 TACAACATCCAAAAAGAG 27981 |||||||| || || ||| Sbjct 739994 TACAACATACAGAAGGAG 740011 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || ||||| || || ||||| ||||| | || ||||| ||| || Sbjct 817936 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCC 817995 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | || || || || || ||||| ||||| | || || | Sbjct 817996 GACACGATCGATAAC--GTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGACC 818053 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || |||||||| ||| | || |||| |||| |||| ||||||||| Sbjct 818054 AGCAGAGGCTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGCACCTTGGCCGATTACA 818113 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||||||||| ||| | ||| |||| Sbjct 818114 ACATCCAAAAAGAGTCCACCCTCCATCTGGT 818144 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || |||||||||||| ||||| | || || || ||| | Sbjct 740732 ATGCAGATATTTGTTAAGACCCTTACTGGGAAAACAATTACTTTGGAAGTTGAGAGCTCA 740791 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| ||||| |||||| || || ||||| |||| ||| | Sbjct 740792 GACACAATTGACAAT--GTCAAGGCAAAAATCCAAGATAAGGAAGGGATTCCACCGGATC 740849 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA-CGAACGCAGCTTGTCCGATTAC 27966 |||| ||||| || || ||||| ||||| | || || ||| | |||| | ||||| Sbjct 740850 AGCAGCGGTTGATCTTCGCCGGCAAACAGCTTGAGGATGGAAGGACTCTTG-CGGATTAT 740908 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || ||| || | ||| ||||| ||||| || | || || Sbjct 740909 AACATACAGAAGGAGTCGACCCTTCATCTGGTTCTGCGTCTGAGGGGTGG 740958 >seq3274 Length=969234 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || ||||| || || || || ||||| | || ||||| ||| || Sbjct 910118 ATGCAGATATTCGTCAAAACCCTAACGGGAAAGACAATTACCCTCGAAGTCGAGAGCTCC 910177 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| |||| ||||| || || ||||| ||||| ||||| ||| | Sbjct 910178 GACACGATTGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACC 910235 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||||||||| ||| | || |||| |||| |||| | ||||||| Sbjct 910236 AGCAGAGGCTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGCACCTTGGCTGATTACA 910295 Query 27968 ACATCCAAAAAGA 27980 | ||||| || || Sbjct 910296 ATATCCAGAAGGA 910308 >seq5785 Length=266748 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || || ||||||||| || ||| | || || || || | Sbjct 171222 ATGCAGATTTTTGTGAAGACACTCACTGGGAAAACCATCACATTGGAGGTTGAGAGTTCG 171163 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| || || || || || || || || |||| ||| | Sbjct 171162 GACACGATTGACAAT--GTTAAGGCTAAGATCCAGGATAAGGAGGGGATTCCACCGGACC 171105 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| ||||| ||| | || || | | | | || | ||||||| Sbjct 171104 AGCAGAGGTTGATCTTTGCAGGAAAGCAACTTGAGGATGGAAGGACTCTGGCTGATTACA 171045 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| |||| ||||| | || | ||| | ||||| || Sbjct 171044 ACATCCAGAAGGAGTCCACTCTGCATCTCGTGCTCCGTCTTCGTGGAGG 170996 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || || ||||||||| || ||| | || || || || | Sbjct 242658 ATGCAGATTTTTGTGAAGACACTCACTGGGAAAACCATCACATTGGAGGTTGAGAGTTCG 242599 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| || || || || || || || || |||| ||| | Sbjct 242598 GACACGATTGACAAT--GTTAAGGCTAAGATCCAGGATAAGGAGGGGATTCCACCGGACC 242541 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| |||| || ||||| ||||| ||| | || || | | | | |||| | |||||| Sbjct 242540 AGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACTCTTG-CTGATTAC 242482 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| |||| ||||| | || | ||| | ||||| || Sbjct 242481 AACATCCAGAAGGAGTCCACTCTGCATCTTGTGCTTCGTCTCCGTGGAGG 242432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355751370931200