Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03]
25,600 sequences; 315,806,082 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq4300 93.3 3e-14
seq3274 86.0 4e-12
seq5785 84.2 2e-11
>seq4300
Length=903212
Score = 93.3 bits (102), Expect = 3e-14
Identities = 147/209 (70%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||| || ||||||||||| || || || || || || | || || || |||
Sbjct 850355 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 850414
Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
||||| || |||| ||||| || || ||||| || || ||||| ||
Sbjct 850415 TCCGACACCATCGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGG 850472
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| ||||| || | || |||||||| || ||| | || |||| |||| ||| ||||||
Sbjct 850473 ACCAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATT 850532
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCAT 27993
||||||| |||||||| ||||||||||
Sbjct 850533 ACAACATTCAAAAAGAATCCACTTTGCAT 850561
Score = 89.7 bits (98), Expect = 4e-13
Identities = 140/198 (71%), Gaps = 12/198 (6%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || || |||||||||||||| || ||| |||||| | || ||||| ||| ||
Sbjct 739820 ATGCAGATCTTCGTGAAAACTCTTACCGGCAAAACTATTACTCTCGAAGTCGAGAGCTCC 739879
Query 27850 GACGATGTACAATCGGTCAAACAAAA----AATAGCC--GACAAAGAAGGTGTTCCGATG 27903
||| || |||| ||| ||| || | || ||||| || || ||||| |
Sbjct 739880 GAC-----ACCATCGA-CAACGTAAAGGCCAAGATCCAAGACAAGGAGGGAATTCCGCCG 739933
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| || || || | || ||||| ||||| || | || |||| |||| |||| |||||
Sbjct 739934 GACCAACAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGAT 739993
Query 27964 TACAACATCCAAAAAGAG 27981
|||||||| || || |||
Sbjct 739994 TACAACATACAGAAGGAG 740011
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || || || ||||| || || ||||| ||||| | || ||||| ||| ||
Sbjct 817936 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCC 817995
Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| ||| | || || || || || ||||| ||||| | || || |
Sbjct 817996 GACACGATCGATAAC--GTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGACC 818053
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| || | || || |||||||| ||| | || |||| |||| |||| |||||||||
Sbjct 818054 AGCAGAGGCTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGCACCTTGGCCGATTACA 818113
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998
|||||||||||||| ||| | ||| ||||
Sbjct 818114 ACATCCAAAAAGAGTCCACCCTCCATCTGGT 818144
Score = 82.4 bits (90), Expect = 5e-11
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| || || |||||||||||| ||||| | || || || ||| |
Sbjct 740732 ATGCAGATATTTGTTAAGACCCTTACTGGGAAAACAATTACTTTGGAAGTTGAGAGCTCA 740791
Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
| || || ||||| ||||| |||||| || || ||||| |||| ||| |
Sbjct 740792 GACACAATTGACAAT--GTCAAGGCAAAAATCCAAGATAAGGAAGGGATTCCACCGGATC 740849
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA-CGAACGCAGCTTGTCCGATTAC 27966
|||| ||||| || || ||||| ||||| | || || ||| | |||| | |||||
Sbjct 740850 AGCAGCGGTTGATCTTCGCCGGCAAACAGCTTGAGGATGGAAGGACTCTTG-CGGATTAT 740908
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| || || ||| || | ||| ||||| ||||| || | || ||
Sbjct 740909 AACATACAGAAGGAGTCGACCCTTCATCTGGTTCTGCGTCTGAGGGGTGG 740958
>seq3274
Length=969234
Score = 86.0 bits (94), Expect = 4e-12
Identities = 136/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || || || ||||| || || || || ||||| | || ||||| ||| ||
Sbjct 910118 ATGCAGATATTCGTCAAAACCCTAACGGGAAAGACAATTACCCTCGAAGTCGAGAGCTCC 910177
Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| ||| |||| ||||| || || ||||| ||||| ||||| ||| |
Sbjct 910178 GACACGATTGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACC 910235
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| || | || ||||||||||| ||| | || |||| |||| |||| | |||||||
Sbjct 910236 AGCAGAGGCTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGCACCTTGGCTGATTACA 910295
Query 27968 ACATCCAAAAAGA 27980
| ||||| || ||
Sbjct 910296 ATATCCAGAAGGA 910308
>seq5785
Length=266748
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| ||||||||||| || || ||||||||| || ||| | || || || || |
Sbjct 171222 ATGCAGATTTTTGTGAAGACACTCACTGGGAAAACCATCACATTGGAGGTTGAGAGTTCG 171163
Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| ||| ||||| || || || || || || || || |||| ||| |
Sbjct 171162 GACACGATTGACAAT--GTTAAGGCTAAGATCCAGGATAAGGAGGGGATTCCACCGGACC 171105
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| |||| || ||||| ||||| ||| | || || | | | | || | |||||||
Sbjct 171104 AGCAGAGGTTGATCTTTGCAGGAAAGCAACTTGAGGATGGAAGGACTCTGGCTGATTACA 171045
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| || ||| |||| ||||| | || | ||| | ||||| ||
Sbjct 171044 ACATCCAGAAGGAGTCCACTCTGCATCTCGTGCTCCGTCTTCGTGGAGG 170996
Score = 82.4 bits (90), Expect = 5e-11
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| ||||||||||| || || ||||||||| || ||| | || || || || |
Sbjct 242658 ATGCAGATTTTTGTGAAGACACTCACTGGGAAAACCATCACATTGGAGGTTGAGAGTTCG 242599
Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| ||| ||||| || || || || || || || || |||| ||| |
Sbjct 242598 GACACGATTGACAAT--GTTAAGGCTAAGATCCAGGATAAGGAGGGGATTCCACCGGACC 242541
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966
|||| |||| || ||||| ||||| ||| | || || | | | | |||| | ||||||
Sbjct 242540 AGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACTCTTG-CTGATTAC 242482
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||| || ||| |||| ||||| | || | ||| | ||||| ||
Sbjct 242481 AACATCCAGAAGGAGTCCACTCTGCATCTTGTGCTTCGTCTCCGTGGAGG 242432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355751370931200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |