Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq16041 113 4e-20 seq3592 113 4e-20 seq5785 96.9 3e-15 seq4300 95.1 1e-14 >seq16041 Length=904 Score = 113 bits (124), Expect = 4e-20 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| || || || || || ||||| | |||||| |||| || Sbjct 360 CACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGTCCGTCTTC 419 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||| || || || || |||||||||| ||||||| | || ||| |||||| Sbjct 420 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGG-ATGCCCTCCTTGTCCT 478 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| ||| |||| ||| | | | || ||| |||||||| |||| ||| || | Sbjct 479 GGATCTTCGCCTTGA-CGTTGTCAATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTC 537 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || ||||| || ||||| || ||||| |||||||| Sbjct 538 TTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 572 >seq3592 Length=5743183 Score = 113 bits (124), Expect = 4e-20 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| || || || || || ||||| | |||||| |||| || Sbjct 5552051 CACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGTCCGTCTTC 5551992 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||| || || || || |||||||||| ||||||| | || ||| |||||| Sbjct 5551991 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGG-ATGCCCTCCTTGTCCT 5551933 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| ||| |||| ||| | | | || ||| |||||||| |||| ||| || | Sbjct 5551932 GGATCTTCGCCTTGA-CGTTGTCAATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTC 5551874 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || ||||| || ||||| || ||||| |||||||| Sbjct 5551873 TTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 5551839 >seq5785 Length=266748 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || ||||||||||| ||||| || | || ||| Sbjct 171926 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGTGTGCGCCCATCCTCA 171985 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || ||||| ||||| | ||||||||| ||||| | || || |||||| Sbjct 171986 AGCTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCT-TCCTTGTCCTG 172044 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| | | | || ||| || || || | || || |||| Sbjct 172045 GATCTTAGCTTTGACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATGGTTTT 172104 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||| || || || || |||||||||||||||| Sbjct 172105 TCCAGTGAGAGTCTTCACAAAGATTTGCATCT 172136 >seq4300 Length=903212 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/220 (71%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||| ||| || || ||| || || || || ||||| ||||| || | | | Sbjct 850800 CGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGCAAGCGTCCTTCCA 850741 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || || ||||| || || ||||| || || |||||||| || |||||| | || || || Sbjct 850740 TCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGTGGGATCCCT-TCCTT 850682 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCG-TATC---GCTCGACTCCACGTCCACCG 39244 |||| |||||| |||| ||| | || | | || |||| || || |||| | Sbjct 850681 GTCCTGGATTTTTGCCTTGA-CGTTGTCAATGGTGTCAGAGCTC---TCGACTTCCAGAG 850626 Query 39245 TGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| | ||||||||||| ||||| || ||||| ||||| Sbjct 850625 TGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 850586 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 |||||||| || || |||||||| | || || |||| || || || || || ||||| Sbjct 850548 TCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCGGCAAAG 850489 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||||||||| | || | | ||| |||||| ||| || |||| ||| Sbjct 850488 ATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 850430 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || ||| |||||| || | ||||| | || || || || ||||| || Sbjct 850429 GTCGATGGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCAC 850370 Query 39273 AAAGATTTGCATCTTTAC 39290 ||| || |||||||| || Sbjct 850369 AAATATCTGCATCTTCAC 850352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429411581772800