Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq18882 150 2e-31 seq22035 114 2e-20 seq18338 105 9e-18 seq23040 87.8 2e-12 >seq18882 Length=869960 Score = 150 bits (166), Expect = 2e-31 Identities = 392/595 (66%), Gaps = 2/595 (0%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || |||||||| || || ||||| ||||||| || || ||||| || ||||| | Sbjct 814223 CACGCAAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAAT 814282 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 || ||||||| || || ||||||||||||||||| | ||| ||| | || || ||||| Sbjct 814283 CCCGGCATTAACCCTCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCTGAGAAGAA 814341 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTAT 48319 || || || ||| ||||| ||| | | |||||| || || | | | || || Sbjct 814342 AATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCGGCGAAAGTCTCCGAGCCGTCGAT 814401 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 ||| | ||||| || ||||| || || || | ||||| || || | ||| Sbjct 814402 CCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTTTCGATGGCGTGAAA 814461 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 |||| || ||||| | | | ||| | |||||| |||| | || |||||||| Sbjct 814462 GAGACGATTCTTTTCGTCGGAGTTTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTC 814521 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499 |||||| || || ||||| || || || || ||||| || | ||| || | || ||| Sbjct 814522 GGAGTGGATGTTCTCAATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTG 814581 Query 48500 TACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAA 48559 |||||||| || | | || | ||||| || || || || || || || Sbjct 814582 GACCTCCGTCATGAACCTGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAA 814641 Query 48560 AAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATT 48619 || || | || || | | || | || |||| | || || | ||||| Sbjct 814642 GAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCG 814701 Query 48620 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATA 48679 || ||||| || | ||| ||||| ||||| |||||||| || || || ||||| || || Sbjct 814702 GAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTA 814761 Query 48680 CATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTT 48734 ||| | ||| || | ||| || || ||||| ||| ||||| || |||||| Sbjct 814762 CATTTCCCAAATTTGTGGGTACTGAATCGGGAACATACAAAATCGATCGGGATTT 814816 >seq22035 Length=61329 Score = 114 bits (126), Expect = 2e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| |||||||| | ||| ||||||||||| ||||||||| || ||| | | || | Sbjct 16980 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 16921 Query 78459 TATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| ||||| || || ||||| | ||| || | || || || || | |||||| Sbjct 16920 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGCAACCCAACAGCAACCCTCATCAA 16862 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 78576 |||||| ||||||||||| | | ||| | || | ||||| | ||| || | |||| Sbjct 16861 CATATGTTGAGGTCTTTCTA-CAACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCA 16803 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| || |||||||| | || ||| || | ||||| ||||| Sbjct 16802 GGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCGATCGTAGATAAT 16754 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| || | |||| | || | || |||||| | |||||| Sbjct 17345 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACGCGCAGCATTGGCACAATACCA 17286 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| ||||||||||| |||||||||||| | || ||||| || || || Sbjct 17285 TTAGATGTCCCATTTGTTCCCCGAATATAACTTCCTGTCGCACGAATGTTGTGAACTGAG 17226 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || ||||| || || || | ||| || ||||| ||||| || || Sbjct 17225 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 17166 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||||| ||||| Sbjct 17165 CCTTCAATACTATCATCTTTCATG 17142 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 77145 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATT 77204 ||||| ||| |||| || ||| |||||||| || | | ||||||||||| | ||| Sbjct 19516 ACTCTGCGACTGTAGATGTTAGAAGTATATGGCTCAAAGCACTCATTGTTTCCAAGAATC 19457 Query 77205 TGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTT 77264 || || || ||||||||||| |||||||||| | |||||| | |||| | || Sbjct 19456 TGGCTGGTTGAGGCAGTTGGCATTGGTGCCACCAGAAGTGAATTTCTCACTCCATTTTTT 19397 Query 77265 CTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGA 77324 || |||| | ||| | |||||||||| |||||||||| ||| |||| | Sbjct 19396 GATATCATATCCCTAAGACCTCCCCAATCCCAACGATCTGAAGGAGTTACACCCCACATG 19337 Query 77325 TCGTATTGTAGAATTCC 77341 || ||| |||||||| Sbjct 19336 TCAGGTTGGAGAATTCC 19320 >seq18338 Length=6336 Score = 105 bits (116), Expect = 9e-18 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||| | ||| ||||||||||| || |||||| ||| || | | || Sbjct 1927 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 1868 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| |||||| || || || || | ||| |||||||| | | || | ||||| Sbjct 1867 GTATGTTTTAATAGCGGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 1809 Query 78517 ACATATGCTGAGGTCTTTCAAC 78538 ||||||||||||| ||||| || Sbjct 1808 ACATATGCTGAGGCCTTTCTAC 1787 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||||||||| | ||| | ||| || | |||| | || | || |||||| | ||| || Sbjct 2257 ACCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 2198 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| || ||||||||| ||||||||||||| |||| ||||| || || || Sbjct 2197 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACCGA 2138 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || ||||| || || || | ||| || ||||| || || ||||| Sbjct 2137 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 2078 Query 78338 ACCCTCTATACTGTCATCCATCAT 78361 || || ||||| ||||| |||| Sbjct 2077 TCCTTCAATACTATCATCTTTCAT 2054 >seq23040 Length=7163423 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||| |||||| || | ||| | | |||||||| |||||| |||| |||| || Sbjct 4860088 CTCTTCTTCATACTGGGAATACAAGTGCTCAAATTCGATTCCCCAGGAATCAGCCAAACC 4860147 Query 77957 AGG-GCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAA 78015 || |||| || | ||||| | ||||||||| | ||||| || | |||| || ||||| Sbjct 4860148 AGAAGCAT-CACTAGGGCAAAACAATGACCATTTTCCATCATCTCTGACTCTTTCCATAA 4860206 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 ||||||| || | ||| |||||| ||| ||||| || Sbjct 4860207 AGAGATCGGGAACCCAGAGAGCATAAAAGAGATCACG 4860243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694446505984000