Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq90076 167 2e-36 seq51752 167 2e-36 >seq90076 Length=2428 Score = 167 bits (184), Expect = 2e-36 Identities = 427/639 (67%), Gaps = 10/639 (2%) Strand=Plus/Minus Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 || ||||||||||| |||||||| || | ||| || | | |||||| || | | ||| Sbjct 2179 CTGTCCGCTACAAACTCTATATACTGACTCATCAACGCCCCGTTCATCCCAACCA-ACGC 2121 Query 16856 AC-CGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAATA- 16912 || ||| || || || || ||| || | ||||||| | ||||| ||||| | || Sbjct 2120 ACACGGCAGCGCGTCGCACACAAACTCCCT-CTCTATATCCACCGCGTCCTTCACTATCG 2062 Query 16913 CTAGCAACTCGTTCCTCGGACGGTGTATGT-TTAAGATGTTTAAACATCAGACATGCGAA 16971 | || || |||||| | | | || || | | | | | || |||||||| Sbjct 2061 CCTTTNACGCGCTCCTCGCT-GATCTTCGTCTTCATAAGGCCGTAGAGCAAGCATGCGAA 2003 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 |||||| || | ||||||||||| ||| | ||||| || || || || || ||||| Sbjct 2002 ATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTTAATCCCGGCAT 1943 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 ||| || || |||| ||||||||| ||| || || || |||||||| || || Sbjct 1942 TAATCCGCGCTTTTTTAGCCAAAATATTGCGCAAAAGCTTCCCGAGAAGAATATTCCTTC 1883 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT 17151 ||| | || || || |||| ||| || ||| | ||| || || || ||||| | Sbjct 1882 CACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGT--CG-ATCCAATC 1826 Query 17152 CTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTT 17211 | |||||| ||| |||| | ||| || |||||| ||||| || | | Sbjct 1825 GAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCGCGGAAGAGGTG 1766 Query 17212 CTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTG 17271 | ||||| | ||| | || || || |||| ||| ||| ||||||||||||||| Sbjct 1765 GTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTACATTTCGGAGTG 1706 Query 17272 TATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 |||||||| || || ||||| || || || ||| ||||| || || | ||| ||||| Sbjct 1705 AATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGGCGACTTGGACTTC 1646 Query 17332 CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 ||| | | || ||||||||| |||||||||||| |||||||| || || Sbjct 1645 TTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGGCGGCGAAGAAGGC 1586 Query 17392 CAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAG 17430 | | || ||||||| | ||| ||||| | ||||| Sbjct 1585 GAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAG 1547 >seq51752 Length=12828 Score = 167 bits (184), Expect = 2e-36 Identities = 426/638 (67%), Gaps = 9/638 (1%) Strand=Plus/Minus Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 || ||||||||||| |||||||| || | ||| || | | |||||| || | | ||| Sbjct 670 CTGTCCGCTACAAACTCTATATACTGACTCATCAACGCCCCGTTCATCCCAACCA-ACGC 612 Query 16856 AC-CGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAATAC 16913 || ||| || || || || ||| || | ||||||| | ||||| ||||| | || Sbjct 611 ACACGGCAGCGCGTCGCACACAAACTCCCT-CTCTATATCCACCGCGTCCTTCACTATCG 553 Query 16914 TAGCAACTCGTTCCTCGGACGGTGTATGT-TTAAGATGTTTAAACATCAGACATGCGAAA 16972 || || |||||| | | | || || | | | | | || ||||||||| Sbjct 552 CCTTTACGCGCTCCTCGCT-GATCTTCGTCTTCATAAGGCCGTAGAGCAAGCATGCGAAA 494 Query 16973 TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC 17032 ||||| || | ||||||||||| ||| | ||||| || || || || || ||||| Sbjct 493 TCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTTAATCCCGGCATT 434 Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092 ||| || || |||| ||||||||| ||| || || || |||||||| || || Sbjct 433 AATCCGCGCTTTTTTAGCCAAAATATTGCGCAAAAGCTTCCCGAGAAGAATATTCCTTCC 374 Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTC 17152 ||| | || || || |||| ||| || ||| | ||| || || || ||||| | Sbjct 373 ACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGT--CG-ATCCAATCG 317 Query 17153 TGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTC 17212 | |||||| ||| |||| | ||| || |||||| ||||| || | | Sbjct 316 AGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCGCGGAAGAGGTGG 257 Query 17213 TCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGT 17272 | ||||| | ||| | || || || |||| ||| ||| ||||||||||||||| Sbjct 256 TTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTACATTTCGGAGTGA 197 Query 17273 ATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 |||||||| || || ||||| || || || ||| ||||| || || | ||| ||||| Sbjct 196 ATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGGCGACTTGGACTTCT 137 Query 17333 ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCC 17392 ||| | | || ||||||||| |||||||||||| |||||||| || || Sbjct 136 TTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGGCGGCGAAGAAGGCG 77 Query 17393 AATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAG 17430 | | || ||||||| | ||| ||||| | ||||| Sbjct 76 AGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAG 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516729547036560