Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq90076 185 1e-41 seq51752 141 1e-28 seq47021 98.7 1e-15 seq47681 84.2 3e-11 >seq90076 Length=2428 Score = 185 bits (204), Expect = 1e-41 Identities = 394/583 (68%), Gaps = 8/583 (1%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| ||||||||||||||||| || |||||||||| ||||| ||||| || || || Sbjct 2014 CAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGT 1955 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAA 24249 | ||| ||||||| || |||||||| ||||||||||| | |||||| | ||| || | Sbjct 1954 TAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGA 1896 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC--ATAAC-CGGCGCTGT 24306 |||| |||||||| || || |||||||| |||| || | || | ||| || || Sbjct 1895 AGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGT 1836 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 | ||||| | | ||||| | |||||| || || || |||| || || || | Sbjct 1835 C---GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGG 1779 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | ||||| | ||| ||||| | ||||| | || || || | | ||| | Sbjct 1778 CGCGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGT 1719 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 ||||||| || |||||||| || || || || || || || ||||| | ||||||| Sbjct 1718 ACATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGG 1659 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 | || |||||| | || | | || | |||||| || || ||||| || Sbjct 1658 CGACTTGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGG 1599 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 24606 | || || || || | || || | || || | ||| ||||| | || || | | || Sbjct 1598 CGGCGAAGAAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAGGCTTTCCC 1539 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | | | || ||| | || | || ||||| ||| | |||||||| |||||||| || | Sbjct 1538 AGTGACGGAGATCCTGCGACAAGTCGACTTCCTCCGCCGTCCAAAACGATGCCTCGGCTT 1479 Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 | || ||||| | |||||| | | || ||||| ||||| || Sbjct 1478 TCTTGTACATCTCCCAGATTTGCGGGTACTGAATCGGAAACAT 1436 >seq51752 Length=12828 Score = 141 bits (156), Expect = 1e-28 Identities = 259/374 (69%), Gaps = 8/374 (2%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| ||||||||||||||||| || |||||||||| ||||| ||||| || || || Sbjct 506 CAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGT 447 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAA 24249 | ||| ||||||| || |||||||| ||||||||||| | |||||| | ||| || | Sbjct 446 TAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGA 388 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC--ATAAC-CGGCGCTGT 24306 |||| |||||||| || || |||||||| |||| || | || | ||| || || Sbjct 387 AGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGT 328 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 | ||||| | | ||||| | |||||| || || || |||| || || || | Sbjct 327 C---GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGG 271 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | ||||| | ||| ||||| | ||||| | || || || | | ||| | Sbjct 270 CGCGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGT 211 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 ||||||| || |||||||| || || || || || || || ||||| | ||||||| Sbjct 210 ACATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGG 151 Query 24487 TAATCTGTACTTCT 24500 | || |||||| Sbjct 150 CGACTTGGACTTCT 137 >seq47021 Length=9578 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 ||||| ||||| | || | || || | |||| | |||| || ||| || | ||| ||| Sbjct 3276 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACTCGCAGCATGGGGACAATGCCA 3335 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 || |||| ||||| || || ||||||| |||||| | ||||| |||||| |||||| Sbjct 3336 TTAGATGTTCCATTTGTTCCACAGATATAACTTCCAGTTGCACGGATATTATGAATTGAG 3395 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | || || || || || ||| ||| | || || || || ||||||||||| Sbjct 3396 ACGCCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGATT 3455 Query 54365 CCCTCTATACTATCATCCATCATG 54388 || || |||||||| || ||||| Sbjct 3456 CCTTCGATACTATCTTCTTTCATG 3479 >seq47681 Length=10123 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 ||||| || || | || | ||| |||| ||| | || | || |||||||| ||| ||| Sbjct 5060 CCTCCTTGGTCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGAACAATTCCA 5119 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 ||||| | ||||| || || ||||| || || | |||||||| || || ||| Sbjct 5120 TTGGACGTCCCATTTGTTCCACGAATATAACTGCCTGTTGCACGAATGTTGTGAACTGAG 5179 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| || || || || ||| ||| | || ||| || || |||||||| || Sbjct 5180 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTATCATATATT 5239 Query 54365 CCCTCTATACTATCATCCATCATG 54388 || || ||||||||||| ||||| Sbjct 5240 CCTTCAATACTATCATCTTTCATG 5263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592785434624160