Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq95098 87.8 2e-12 seq35333 86.0 5e-12 seq55405 82.4 7e-11 >seq95098 Length=1037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||||||||| || |||||||| || |||||||| |||||| | ||| |||| ||| Sbjct 960 GATCAACAAAGGCTGATCTTTGCCGGAAAACAACTCGAAGATGGCCGTACTTTGGCGGAT 901 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||| ||||| |||||||| || || ||| | ||| Sbjct 900 TACAACATTCAAAAGGAATCAACCCTCCACCTTGTG 865 >seq35333 Length=5286 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | |||||| | ||||| ||||| || ||| || ||| | Sbjct 194 ATGCAGATCTTCGTTAAAACACTCACGGGTAAAACAATCACCTTGGAGGTGGAGAGTTCC 253 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| ||||| ||||| ||||| | || ||||| Sbjct 254 GACACAATTGATAATGTTAAGGCCAAAATCCAGGATAAGGAAGGAATCCCACCGGATCAG 313 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || ||||| || |||||||| || || ||| || || | || |||||||| Sbjct 314 CAGCGTCTGATCTTCGCTGGCAAACAGCTTGAGGATGGCAGGACCCTTGCAGATTACAAC 373 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||| ||||||||| |||| | || || | ||||| Sbjct 374 ATTCAGAAGGAATCGACTCTTCACCTGGTTCTGCGTTTGAGGGGAGG 420 >seq55405 Length=4719 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| ||||| || ||| | || ||| || || ||||| |||||||| || || Sbjct 3106 AAAATTCAGGATAAGGAGGGTATCCCACCAGACCAGCAGAGACTGATCTTTGCTGGAAAG 3047 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 || || |||||| ||| | || |||||||| || ||||||||||| || |||||| Sbjct 3046 CAGCTTGAAGATGGTCGTACTCTTGCTGATTACAACATCCAGAAGGAATCAACACTTCAC 2987 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 ||||| | || | ||||| || Sbjct 2986 TTGGTGCTTCGCCTTCGAGGTGG 2964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427677495241010