Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq119983 113 4e-20 seq7711 113 4e-20 seq35332 102 7e-17 seq55405 98.7 8e-16 seq9706 96.9 3e-15 seq7293 93.3 4e-14 seq95098 87.8 2e-12 seq119621 86.0 5e-12 seq61388 86.0 5e-12 seq67990 84.2 2e-11 >seq119983 Length=969 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||| | |||||||||||| |||||||||||||| || ||||| || | ||| Sbjct 398 AGGACAAGATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGCAAGGGTACGGCCATCC 339 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || || | ||||| |||||||| || || | ||||| ||||| Sbjct 338 TCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCTTTGTCC 279 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | |||||| |||| |||| ||| || ||| Sbjct 278 TGGATCTTTGCCTTGACATTATCAATGGTATCAGAACTCTCCACCTCCAAGGTGATCGTC 219 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || || || || |||||||| ||||| Sbjct 218 TTTCCTGTCAAAGTCTTAACAAATATCTGCAT 187 >seq7711 Length=5731 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||| | |||||||||||| |||||||||||||| || ||||| || | ||| Sbjct 738 AGGACAAGATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGCAAGGGTACGGCCATCC 679 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || || | ||||| |||||||| || || | ||||| ||||| Sbjct 678 TCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCTTTGTCC 619 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | |||||| |||| |||| ||| || ||| Sbjct 618 TGGATCTTTGCCTTGACATTATCAATGGTATCAGAACTCTCCACCTCCAAGGTGATCGTC 559 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || || || || |||||||| ||||| Sbjct 558 TTTCCTGTCAAAGTCTTAACAAATATCTGCAT 527 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||| |||||||||||||| || |||| ||| | | ||||||| ||| || || Sbjct 267 GTAGACTCTTTTTGAATGTTATAATCTGCCAAGGTGCGACCATCCTCCAACTGCTTTCCA 208 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || |||||||| || || || | ||||||||||| |||||| ||| Sbjct 207 GCAAAGATCAGTCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTC 148 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | ||| || ||| || | |||||||||||| || |||| ||| Sbjct 147 ACGTTATCAATAGTGTCGGAACTCTCGACCTCGAGGGTAATGGTCTTCCCTGTTAGGGTT 88 Query 21159 TTGACAAATATTTGCAT 21175 ||||| ||||||||||| Sbjct 87 TTGACGAATATTTGCAT 71 >seq35332 Length=499 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || |||||||| || | ||| | ||||| ||||| |||||||||||||| | Sbjct 474 TTCCACCACGGAGCCTGAGGACAAGATGAAGGGTGGATTCCTTCTGAATGTTATAGTCGG 415 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| ||| || |||| |||| || || || || | || | ||| ||||||||| | Sbjct 414 CCAAGGTACGGCCGTCTTCCAATTGCTTACCGGCGAAGATCAATCTTTGCTGGTCCGGCG 355 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||| || ||||| | | ||| || || |||| Sbjct 354 GGATACCTTCCTTGTCCTGGATTTTAGCCTTCACGTTGTCGATCGTGTCCGAACTCTCCA 295 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||| ||||| || || | |||||||| || || ||||| Sbjct 294 CCTCAAGAGTAATCGTCTTCCCTGTAAGGGTTTTGACGAAGATCTGCAT 246 >seq55405 Length=4719 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | ||||||||||| || || || ||||| || Sbjct 2736 CCTCCACGAAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCA 2795 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | || || ||||| || || ||| | || || |||||||| || || Sbjct 2796 AGGGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGATCTGGAGGG 2855 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||||| ||| || | | | ||||| ||| | Sbjct 2856 ATGCCTTCCTTGTCTTGGATCTTTGCTTTAACATTATCAATGGTATCTGAACTCTCAACT 2915 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| |||||| ||||| || || | || |||||||| |||||||| Sbjct 2916 TCCAAGGTAATAGTCTTCCCAGTAAGAGTCTTGACAAAGATTTGCAT 2962 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/206 (69%), Gaps = 18/206 (9%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||||||||| || || || | | |||||||| || || || Sbjct 3222 GTGGACTCCTTCTGGATGTTATAGTCAGCAAGTGTGCGCCCATCCTCCAGTTGCTTACCA 3281 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | ||||| ||||||||||| || | |||||||| || ||| ||||| || Sbjct 3282 GCAAAGATAAGCCTCTGCTGGTCAGGTGGGATCCCTTCCTTATCCTGGAT-TTTTGCTT- 3339 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCG---TTTCCAC------GGTAATGGTCTTGCCG 21149 |||| ||||| || || | |||| || ||| |||||||| || Sbjct 3340 -------TGACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATGGTCTTACCT 3392 Query 21150 GTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||| ||||| |||||||| Sbjct 3393 GTGAGAGTTTTAACAAAGATTTGCAT 3418 >seq9706 Length=10732 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||| ||||| | |||| || |||||||| ||||| || || || ||| Sbjct 987 CCACCACGAAGCCGAAGCACAAGGTGCAGTGTCGACTCCTTCTGAATATTGTAATCGGCC 1046 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | ||||||| ||||| ||||| ||| | || || | |||||||||| || Sbjct 1047 AAAGTCCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTGGG 1106 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| ||||| | | ||| || || | |||| Sbjct 1107 ATTCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACC 1166 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||||||||||| || |||| ||||| || || || ||||| ||| Sbjct 1167 TCTAACGTAATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTG 1217 >seq7293 Length=4729 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||||||||| |||| || | || |||||||| |||||||| ||||| || Sbjct 4703 CCTCCACGCAGCCTGAGAACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGCA 4644 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||| ||| || || || |||| | |||||||||||| || Sbjct 4643 AGGGTACGGCCATCTTCCAACTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCCGGCGGA 4584 Query 21069 ACGCCTTCCTTGTC 21082 | ||||||||||| Sbjct 4583 ATTCCTTCCTTGTC 4570 >seq95098 Length=1037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||| | || | |||||||| || ||||| || || || || Sbjct 160 CCACCACGGAGACGGAGCACAAGGTGAAGGGTGGACTCTTTCTGAATATTGTAATCAGCG 219 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGC-ATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || |||||||||||||||| || || | ||||||| ||||| || || || Sbjct 220 AGAGTCCTACCGTCCTCCAGCTGTTTCCCAGCNAAAAATAAGCCTCTGTTGATCTGGTGG 279 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | || |||||||| |||||| |||||| | ||| || ||| | |||| Sbjct 280 GATCCCCTCCTTGTCCTGGATCTTAGCTTTCACATTATCGATCGTGTCAGAGCTCTCCAC 339 Query 21128 TTCC-ACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| | || || ||||| || ||||| || || ||||| || |||||| Sbjct 340 CTCCNAAAGTTATCGTCTTCCCAGTTAATGTCTTCACAAAGATCTGCATT 389 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| || || | ||||| ||||||||||| || ||||| || || ||| Sbjct 619 CCTCCACGAAGCCTAAGGACGAGATGCAGGGTGGACTCCTTCTGTATGTTGTAATCGGCC 678 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCA-CGGG 21067 || || || | || || || || ||||| ||| |||| | | ||||||||| ||| Sbjct 679 AGAGTGCGGCCATCGTCTAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCCNGGGGG 738 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | |||||||| || |||||| || || | | | ||||| ||| Sbjct 739 AATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTATCAATTGTATCGGAACTCTCAAC 798 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | || || ||||| || |||| ||||| ||||| |||||||| Sbjct 799 TTCAAGAGTTATCGTCTTACCCGTTAGGGTTTTAACAAAAATTTGCAT 846 >seq119621 Length=933 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || ||||||||||| ||||||||||| || || || | | ||| Sbjct 472 AGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACCATCC 413 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || |||||||| ||| |||| | ||||||||||| || | || |||||||| Sbjct 412 TCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 353 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || || || | | | | || || | ||| ||||| || || || Sbjct 352 TGGATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATTGTT 293 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | ||||| ||||| |||||||| Sbjct 292 TTACCAGTCAGGGTTTTTACAAAGATTTGCAT 261 >seq61388 Length=1455 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || ||||||||||| ||||||||||| || || || | | ||| Sbjct 379 AGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACCATCC 438 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || |||||||| ||| |||| | ||||||||||| || | || |||||||| Sbjct 439 TCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 498 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || || || | | | | || || | ||| ||||| || || || Sbjct 499 TGGATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATTGTT 558 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | ||||| ||||| |||||||| Sbjct 559 TTACCAGTCAGGGTTTTTACAAAGATTTGCAT 590 >seq67990 Length=6038 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | ||||| || |||| || | || ||||||||||||||||| || || | Sbjct 4580 TTCCTCCCCTGAGCCTTAGGACCAAGTGAAGCGTTGACTCCTTTTGAATGTTGTAATCTG 4521 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | || ||| || | || |||| ||||| || ||| |||| | ||||||||| ||| | Sbjct 4520 CAAGAGTTCGGCCATCTTCCAATTGTTTACCAGCAAAAATCAATCTCTGCTGATCCGGAG 4461 Query 21067 GCACGCCTTCCTTGTC 21082 | | || |||||||| Sbjct 4460 GGATACCCTCCTTGTC 4445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421610037443672