Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq35333 132 7e-26 seq119621 125 1e-23 seq61388 125 1e-23 seq55405 113 7e-20 seq7711 113 7e-20 seq93646 102 1e-16 seq95098 95.1 2e-14 >seq35333 Length=5286 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||||||||| || || || || ||||| | ||| | || | Sbjct 422 ATGCAGATTTTTGTAAAGACACTCACTGGGAAGACAATAACATTGGAGGTGGAGAGTTCT 481 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| ||||| || ||||| || || || || || ||||| |||||| Sbjct 482 GATACAATTGACAATGTAAAAGCTAAGATTCAGGACAAGGAGGGAATTCCACCGGATCAA 541 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| || || ||||| || |||||||| | || ||| | | |||||||| Sbjct 542 CAAAGGCTTATCTTCGCTGGAAAGCAGCTAGAGGATGGCCGCACACTTGCTGATTATAAC 601 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||| || || || || | ||| |||| | ||| | || |||||| Sbjct 602 ATTCAGAAGGAGTCTACCCTCCATCTGGTCCTCCGTCTTCGTGGTGGT 649 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| || ||||| || || || || || |||||| | || ||||| ||||| Sbjct 50 AAGATTCAAGACAAGGAAGGAATCCCGCCGGACCAGCAAAGGTTGATCTTTGCCGGAAAG 109 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| || || | || || || | || ||||| || ||||||||||||||| | ||| Sbjct 110 CAATTGGAAGACGGCCGGACCTTGGCCGACTATAACATCCAAAAAGAATCAACTCTTCAT 169 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| | |||||||| || || || Sbjct 170 CTGGTTCTTCGTTTACGTGGAGGCAT 195 >seq119621 Length=933 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||||| || || || ||||| || ||| | ||| | || ||| Sbjct 489 ATGCAGATATTTGTGAAGACTCTTACGGGGAAAACAATCACTTTGGAGGTGGAGAGCTC- 547 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| ||||| ||||||||||| || || ||||| ||||| ||||| Sbjct 548 TGACACTATTGACAATGTAAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCAGATCA 607 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| ||||| ||||| || | || ||| | | || | | ||| ||||| Sbjct 608 GCAGAGGCTTATCTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAA 667 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| || | || |||||| | || | || |||||||| Sbjct 668 CATCCAGAAAGAATCCACACTCCACTTGGTTCTTCGCCTCCGTGGTGGTAT 718 Score = 113 bits (124), Expect = 7e-20 Identities = 164/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || || ||||| || || | || | ||| Sbjct 32 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAAACGATCACCCTTGAAGTGGAAAGCTCC 91 Query 124599 GATACAATTTCTAATTTAAAA-CAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| |||| | ||| | |||||||| || || || || || || || || || Sbjct 92 GACACAATTGATAATGTCAAAGCCNAAAATTCAGGACAAGGAGGGGATCCCTCCGGACCA 151 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||||||||||||||||| || ||| | |||||| | || ||| | | || || || Sbjct 152 GCAAAGGCTTATTTTTGCAGGTAAGCAACTTGAGGATGGACGCACACTTGCTGACTACAA 211 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || |||| ||||| | ||| | | |||||||| Sbjct 212 CATTCAGAAGGAGTCTACACTGCACTTGGTCCTTCGTCTCAGGGGTGGTAT 262 >seq61388 Length=1455 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||||| || || || ||||| || ||| | ||| | || ||| Sbjct 362 ATGCAGATATTTGTGAAGACTCTTACGGGGAAAACAATCACTTTGGAGGTGGAGAGCTC- 304 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| ||||| ||||||||||| || || ||||| ||||| ||||| Sbjct 303 TGACACTATTGACAATGTAAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCAGATCA 244 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| ||||| ||||| || | || ||| | | || | | ||| ||||| Sbjct 243 GCAGAGGCTTATCTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAA 184 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| || | || |||||| | || | || |||||||| Sbjct 183 CATCCAGAAAGAATCCACACTCCACTTGGTTCTTCGCCTCCGTGGTGGTAT 133 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || || ||||| || || | || | ||| Sbjct 818 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAAACGATCACCCTTGAAGTGGAAAGCTCC 759 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| |||| | ||| |||||||| || || || || || || || || || Sbjct 758 GACACAATTGATAATGTCAAAGCCAAAATTCAGGACAAGGAGGGGATCCCTCCGGACCAG 699 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||||||||||||||| || ||| | |||||| | || ||| | | || || || Sbjct 698 CAAAGGCTTATTTTTGCAGGTAAGCAACTTGAGGATGGACGCACACTTGCTGACTACAAC 639 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || |||| ||||| | ||| | | |||||||| Sbjct 638 ATTCAGAAGGAGTCTACACTGCACTTGGTCCTTCGTCTCAGGGGTGGTAT 589 >seq55405 Length=4719 Score = 113 bits (124), Expect = 7e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| | || || |||||||| || | ||| |||| | Sbjct 2507 AATGCAGATTTTTGTTAAGACCTTGACTGGAAAAACTATCACCCTGGAGGTTGAGGGTTC 2448 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | || |||||||| || || ||||| || ||||||||||| Sbjct 2447 GGACACTGTTGATAATGTGAAGGCTAAAATTCAGGACAAGGAAGGGATTCCACCTGATCA 2388 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || || ||| | |||||| | || || || | ||||| || Sbjct 2387 GCAGAGGTTGATCTTTGCTGGTAAGCAACTGGAGGATGGGCGCACTTTGGCTGATTACAA 2328 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 ||| ||||| || || ||||||||| | || | || | || |||||| || || Sbjct 2327 TATCCAAAAGGAGTCTACTTTGCATCTCGTCCTTCGCCTGCGTGGTGGTTTTTAA 2273 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || |||||||| ||| | || |||| | Sbjct 3190 ATGCAGATCTTTGTGAAAACCCTTACTGGAAAAACTATCACTTTGGAAGTTGAGAGTTCT 3131 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||||| ||||| || ||||| ||||| || || Sbjct 3130 GACACTATTGACAATGTCAAGGCCAAAATTCAGGATAAGGAGGGTATCCCACCAGACCAG 3071 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || || ||||| ||||| || | || ||| |||| || | | ||||| || Sbjct 3070 CAGAGACTGATCTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACTCTTGCTGATTACAAC 3011 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || |||||||| | || ||||| | || | ||||||||||| Sbjct 3010 ATCCAGAAGGAATCAACACTTCACTTGGTGCTTCGCCTTCGAGGTGGTAT 2961 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || || || || | || | ||| | ||| Sbjct 2734 ATGCAAATCTTTGTGAAGACTTTGACTGGGAAGACAGTCACCTTGGAGGTCGAAAGTTCA 2675 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| |||| | || || |||||||||||||| || || ||||| ||||| Sbjct 2674 GACACAATAGATAATGTGAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCAGATCAG 2615 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||||||||| || || | || ||| | | || | | ||||||||| Sbjct 2614 CAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTATAAC 2555 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||||| ||||| || |||| ||||| Sbjct 2554 ATCCAAAAGGAATCCACACTGCACTTGGT 2526 >seq7711 Length=5731 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||||||||| | || || |||||||| || || || || | ||| | || Sbjct 71 ATGCAAATATTCGTCAAAACCCTAACAGGGAAGACCATTACCCTCGAGGTCGAGAGTTCC 130 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || ||||| || ||||| || ||||| |||||| Sbjct 131 GACACTATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAA 190 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || || ||||| ||||| || || |||||| |||| || || | ||||||||| Sbjct 191 CAGAGACTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGCACCTTGGCAGATTATAAC 250 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || || | ||| | || | ||| | || || ||||| Sbjct 251 ATTCAAAAAGAGTCTACCCTTCATCTTGTCCTTCGTCTCCGTGGAGGTAT 300 >seq93646 Length=475 Score = 102 bits (112), Expect = 1e-16 Identities = 160/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGG-CAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||| ||| | ||||| || || || ||| || || || | ||| ||||| Sbjct 211 ATGCAAATCTTTGTGAAGACTCTTACCGGNCAAGACCATTACCCTTGAGGTTGAAAGCTC 270 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| |||| ||||| || || || || || || || | ||||| || || Sbjct 271 TGACACCATTGATAATGTAAAAGCCAANATNCAGGANAAGGANGGNNTCCCACCNGACCA 330 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || || || ||||| ||||| || | || ||| |||| || | | ||||| || Sbjct 331 GCAGAGNCTNATCTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACTCTTGCTGATTACAA 390 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || |||||||| | || ||||| | || | ||||||||||| Sbjct 391 CATCCAGAAGGAATCAACACTTCACTTGGTGCTTCGCCTTCGAGGTGGTAT 441 >seq95098 Length=1037 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAG-AGATTGA-AGCA 124595 |||||| || ||| | |||||| |||| || || || |||||| | | || | || ||| Sbjct 389 AATGCAGATCTTTGTGAAGACATTAACTGGGAAGACGATAACTTTNGGAGGTGGAGAGCT 330 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||| || || |||| | ||| || || || || || || || || ||||| ||| Sbjct 329 C-TGACACGATCGATAATGTGAAAGCTAAGATCCAGGACAAGGAGGGGATCCCACCAGAT 271 Query 124656 CAACAAAGGCTTATTTTT-GCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTA 124714 ||||| |||||||||||| || || ||||| | ||||| || | || | | ||||| Sbjct 270 CAACAGAGGCTTATTTTTNGCTGGGAAACAGCTGGAGGACGGTAGGACTCTCGCTGATTA 211 Query 124715 TAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||| ||||| || || | || | || | ||| | || |||||| Sbjct 210 CAATATTCAGAAAGAGTCCACCCTTCACCTTGTGCTCCGTCTCCGTGGTGGT 159 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || || || || ||||| || || || |||||||||||||| || ||||| |||||| Sbjct 990 AAGATCCAGGACAAGGAAGGGATTCCTCCGGATCAACAAAGGCTGATCTTTGCCGGAAAA 931 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAAC 124735 ||| | || ||| | || || || | ||||| || |||||||| |||||||| Sbjct 930 CAACTCGAAGATGGCCGTACTTTGGCGGATTACAACATTCAAAAGGAATCAAC 878 Score = 87.8 bits (96), Expect = 3e-12 Identities = 145/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || ||||| || || || |||||| | || |||| Sbjct 846 ATGCAAATTTTTGTTAAAACCCTAACGGGTAAGACGATAACTCTTGAAGTTGAGAGTTCC 787 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT-GATC 124656 ||||||||| |||| |||| || || ||||||||||| ||||| || || || || | Sbjct 786 GATACAATTGATAATGTTAAGGCA-AAGATTCAAGATAAGGAAGGAATTCCCCCNGGACC 728 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||| | | |||||||| || || ||| |||| ||| | || || | | ||||| | Sbjct 727 AGCAACGTTTGATTTTTGCCGGCAAGCAACTAGACGATGGCCGCACTCTGGCCGATTACA 668 Query 124717 ATATTCAAAAAGAATCAACTTTGCAT 124742 | || || || || || || ||||| Sbjct 667 ACATACAGAAGGAGTCCACCCTGCAT 642 Score = 86.0 bits (94), Expect = 9e-12 Identities = 151/219 (69%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTA-TAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||| ||| | ||||| || || || || || || || | || ||||| Sbjct 617 ATGCAAATTTTTNGTTAAGACCCTCACTGGTAAGACAATCACCTTGGAAGTTGAAAGCTC 558 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | || ||||| |||||||| ||||| || ||||||||||| Sbjct 557 TGACACGATCGACAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCACCTGATCA 498 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || ||||| |||||||| | |||||| | | || | | |||||| || Sbjct 497 GCAGCGTCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCAGGACCCTTGCAGATTACAA 438 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTT 124756 || || || ||||| ||| | || |||| | ||||| Sbjct 437 CATACAGAAGGAATCTACTCTCCACCTGGTCCTGCGTTT 399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754264815865600