Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq9706 114 1e-20 seq119621 111 2e-19 seq61388 111 2e-19 seq7711 105 8e-18 seq55405 98.7 1e-15 seq4456 95.1 1e-14 seq93646 91.5 2e-13 seq72342 86.0 7e-12 seq118654 82.4 9e-11 seq74120 82.4 9e-11 seq19854 82.4 9e-11 seq9291 82.4 9e-11 seq6282 82.4 9e-11 >seq9706 Length=10732 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| |||||||||||||| |||| |||||| |||| || |||||| Sbjct 1011 TGCAGTGTCGACTCCTTCTGAATATTGTAATCGGCCAAAGTCCGTCCGTCCTCGAGCTGC 1070 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || || || ||||| ||||||||||| | || | | |||||||| | ||| | || Sbjct 1071 TTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGT-CTTGAATCTT 1129 Query 43101 TG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | || | | | | ||||| || ||||| || | ||| ||||| || ||||| Sbjct 1130 CGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACCTCTAACGTAATGGTCTTCCCCGT 1189 Query 43160 TAGCGTCTTTACAAAGATTTGCATTTT 43186 ||| || || || ||||| ||||| || Sbjct 1190 TAGGGTTTTCACGAAGATCTGCATCTT 1216 >seq119621 Length=933 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | ||||| |||| ||| |||||| ||||| ||||| ||||| Sbjct 259 CCACCCCTGAGACGAAGGACCAAGTGCAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCA 200 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || || |||||||| || || || || | |||||||| | || Sbjct 199 AGTGTGCGTCCATCCTCAAGTTGCTTACCTGCAAAAATAAGCCTTTGCTGGTCCGGAGGG 140 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG--TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | |||||||||| ||| |||| | ||||| | | | |||||| ||||| Sbjct 139 ATCCCCTCCTTGTCC-TGAATTTTNGGCTTTGACATTATCAATTGTGTCGGAGCTTTCCA 81 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||| ||||| || || || |||||||||||||| ||||| Sbjct 80 CTTCAAGGGTGATCGTTTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 32 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | || ||||||||| || || || ||||| ||||| || | Sbjct 476 ACGAAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACC 417 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || || || ||||| || || | | ||||||||| | || | | |||||| Sbjct 416 ATCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTT 357 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCGACCGTGA 43146 |||| |||||| |||| ||| | || | ||||| |||||| || | || | Sbjct 356 GTCCTGGATTTTAGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTA 298 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| || || || || ||||||||||||||||| Sbjct 297 TTGTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 261 >seq61388 Length=1455 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | ||||| |||| ||| |||||| ||||| ||||| ||||| Sbjct 592 CCACCCCTGAGACGAAGGACCAAGTGCAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCA 651 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || || |||||||| || || || || | |||||||| | || Sbjct 652 AGTGTGCGTCCATCCTCAAGTTGCTTACCTGCAAAAATAAGCCTTTGCTGGTCCGGAGGG 711 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||||||| ||| |||| | ||||| | | | |||||| |||||| Sbjct 712 ATCCCCTCCTTGTCC-TGAATTTTGGCTTTGACATTATCAATTGTGTCGGAGCTTTCCAC 770 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| ||||| || || || |||||||||||||| ||||| Sbjct 771 TTCAAGGGTGATCGTTTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 818 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | || ||||||||| || || || ||||| ||||| || | Sbjct 375 ACGAAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACC 434 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || || || ||||| || || | | ||||||||| | || | | |||||| Sbjct 435 ATCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTT 494 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCGACCGTGA 43146 |||| |||||| |||| ||| | || | ||||| |||||| || | || | Sbjct 495 GTCCTGGATTTTAGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTA 553 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| || || || || ||||||||||||||||| Sbjct 554 TTGTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 590 >seq7711 Length=5731 Score = 105 bits (116), Expect = 8e-18 Identities = 157/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||||| || | || ||||| |||||||||||||| || ||||||| | | Sbjct 513 CGCAACACCAGGTGAAGAGTTGATTCCTTCTGAATATTGTAATCCGCAAGAGTCCTCCCA 454 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| ||||| || || | |||||||| || | || | | |||||| Sbjct 453 TCCTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTG 394 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 ||| ||| | || | || | ||| | | | ||| || |||| ||||| || | || Sbjct 393 TCC-TGAATCTTGGCTTTAACGTTGTCAATCGTATCAGAGCTC---TCCACCTCCAAAGT 338 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || || ||||| |||||||| ||||| Sbjct 337 AATTGTTTTCCCTGTCAGGGTCTTAACAAAGATCTGCAT 299 >seq55405 Length=4719 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||||| ||||| || | ||| |||||| || || || || ||||| Sbjct 3192 CCACCCCTGAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCA 3251 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || || ||||||||||| || || || | ||||||||| | || Sbjct 3252 AGTGTGCGCCCATCCTCCAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGTGGG 3311 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||| ||| ||||||| ||||| | | | |||||| ||| || Sbjct 3312 ATCCCTTCCTTATCCTGGATTTTTGCTTTGACATTATCAATGGTGTCGGAGCTTTCAACC 3371 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || ||||| || || || || || || |||||||||||||| Sbjct 3372 TCAAGGGTTATGGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 3418 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/209 (71%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 |||||| || ||||||||| |||||||||||||||| ||| ||| | || || || || Sbjct 2303 ATGCAAAGTAGACTCCTTTTGGATATTGTAATCAGCCAAAGTGCGCCCATCCTCCAGTTG 2362 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||||||||| || || | | |||||| || | || | | ||||||||| ||| ||| Sbjct 2363 CTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCTTCCTTGTCC-TGAATTT 2421 Query 43100 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGTTTTGC 43155 | | || | | | || ||||| ||| || || || | ||||| ||||| | Sbjct 2422 TAGCCTTCACATTATCAACAGTGTC---CGAACCCTCAACCTCCAGGGTGATAGTTTTTC 2478 Query 43156 CCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || | ||||| ||||| || |||||| Sbjct 2479 CAGTCAAGGTCTTAACAAAAATCTGCATT 2507 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | ||| ||||| || || ||||||||||| ||||| || | || || Sbjct 2981 CACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAATCAGCAAGAGTACGACCATCTTC 3040 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| ||||| || || |||| ||||||||| | || | | |||||| ||| | Sbjct 3041 AAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATACCCTCCTTATCC-T 3099 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 || |||| | |||| | | | ||||| ||| || || || | ||||| | Sbjct 3100 GAATTTTGGCCTTGACATTGTCAATAGTGTCAGAACTC---TCAACTTCCAAAGTGATAG 3156 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || || || || |||||||| ||||| Sbjct 3157 TTTTTCCAGTAAGGGTTTTCACAAAGATCTGCAT 3190 >seq4456 Length=3005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||||||||| |||||||| ||| |||| || || ||||| || ||||| Sbjct 2873 TCCTTCTGAATATTGTAATCGGCCAGAGTACGCCCGTCTTCAAGTTGCTTTCCGGCGAAG 2814 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | |||||||| || | || | | ||| ||||| ||| || |||| ||| Sbjct 2813 ATCAAGCGCTGCTGATCCGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTT 2755 Query 43113 G-CCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | | ||| ||| ||| || || || | || ||||| ||||| ||||| || || Sbjct 2754 GTCGATCGTATCGGAACTC---TCGACTTCAAGAGTTATGGTCTTGCCGGTTAGGGTTTT 2698 Query 43169 TACAAAGATTTGCATTTT 43186 || ||||| ||||| || Sbjct 2697 CACGAAGATCTGCATATT 2680 >seq93646 Length=475 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/214 (69%), Gaps = 7/214 (3%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | ||| ||||| || || ||||||||||| ||||| || | || || Sbjct 421 CACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAATCAGCAAGAGTACGACCATCTTC 362 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| ||||| || || || | ||||||||| | || | | ||||| ||| Sbjct 361 AAGCTGCTTTCCAGCAAAGATNAGNCTCTGCTGGTCNGGTGGGANNCCNTCCTTNTCCTG 302 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 || || ||| | | | | ||||| ||| ||| || || | || ||||| Sbjct 301 NATNTTGGCTTTTACATTATCAATGGTGTCAGAGCT---TTCAACCTCAAGGGTAATGGT 245 Query 43151 TTTGCCC-GTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || ||||| |||||||||||||| Sbjct 244 CTTGNCCGGTAAGAGTCTTCACAAAGATTTGCAT 211 >seq72342 Length=5324 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/107 (79%), Gaps = 5/107 (5%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||||| || || || ||| ||||||||| |||| |||||||||||||||| ||||| Sbjct 385 AAAATTATCGCCGTTGCCGGGGATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACT 326 Query 60118 CACCACTATACTAC--CGA--GGATTGAATATATAACTTGAATATTA 60160 |||||||||||||| ||| | |||| ||| | | ||||||| || Sbjct 325 CACCACTATACTACAACGACTTGTTTGATTATTTTA-TTGAATAATA 280 >seq118654 Length=1034 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||||| || ||| || ||| ||||||||| |||| |||||||||||||||| | Sbjct 828 ATTAAAAAACATCGCCTTTGCCGGGGATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAA 887 Query 60114 TACTCACCACTATACTAC 60131 |||||||||||||||||| Sbjct 888 TACTCACCACTATACTAC 905 >seq74120 Length=11356 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||| |||| || || ||| ||||||||| |||| |||||||||||||||| |||||| Sbjct 5596 AAAATTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTC 5537 Query 60119 ACCACTATACTAC 60131 ||||||||||||| Sbjct 5536 ACCACTATACTAC 5524 >seq19854 Length=16582 Score = 82.4 bits (90), Expect = 9e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 60073 GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACC 60132 || ||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||| Sbjct 2626 GCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTACA 2567 Query 60133 GAGGATTGAATATATAACTT 60152 | |||| |||| ||||| Sbjct 2566 ACGACTTGATTATA-AACTT 2548 >seq9291 Length=6530 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/77 (84%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCG--GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||| | |||| || || ||| ||||||||| |||| |||||||||||||||| || Sbjct 630 AAAAAATATCTCGCCGTTGCCGGGGATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 571 Query 60115 ACTCACCACTATACTAC 60131 ||||||||||||||||| Sbjct 570 ACTCACCACTATACTAC 554 >seq6282 Length=1489 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 60051 TTTATGAAAAATTTTCTCCTCGG---CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGG 60107 || |||||||||| | ||| | | | ||| ||||||||| |||| ||||||||||||| Sbjct 1293 TTAATGAAAAATTATTTCCGCCGTTGCCGGGGATCGAACCCGGGTCGCCCGCGTGACAGG 1234 Query 60108 CGGACATACTCACCACTATACTAC 60131 ||| ||||| ||||||||||||| Sbjct 1233 CGGGAATACTTACCACTATACTAC 1210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570915972303760