Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq67990 113 7e-20 seq95098 98.7 1e-15 seq55405 89.7 8e-13 seq7711 89.7 8e-13 >seq67990 Length=6038 Score = 113 bits (124), Expect = 7e-20 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 ||||| || || || |||| ||||| || | || || || ||| || || || ||||| Sbjct 4581 GTTCCTCCCCTGAGCCTTAGGACCAAGTGAAGCGTTGACTCCTTTTGA-ATGTTGTAATC 4523 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 || |||||||| || ||| || |||||||| ||||||||||||||||| ||||||||||| Sbjct 4522 TGCAAGAGTTCGGCCATCTTCCAATTGTTTACCAGCAAAAATCAATCTCTGCTGATCCGG 4463 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 ||| || || || || || || Sbjct 4462 AGGGATACCCTCCTTGTCCTG 4442 >seq95098 Length=1037 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||| || | ||||||||| || ||| || ||||||| ||| || |||| ||| || Sbjct 408 ACCAGGTGGAGAGTAGATTCCTTCTGTATGTTGTAATCTGCAAGGGTCCTGCCATCCTCA 467 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||||| |||| | |||||||| || ||||||||||| |||||||| Sbjct 468 AGCTGTTTTCCAGCAAAGATCAGACGCTGCTGATCAGGTGGAATTCCTTCCTTATCTTG 526 >seq55405 Length=4719 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | ||||| | ||||| || | || ||||| || || |||||||||| Sbjct 2506 TTCCTCCGCGCAGTCTCAGCACCAAGTGCAGTGTGGATTCCTTTTGGATGTTATAATCTG 2565 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| || || | ||| || | || || || ||||||||||| || |||||||| || | Sbjct 2566 CAAGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGATCTGGTG 2625 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || ||||||||||| Sbjct 2626 GAATGCCCTCTTTATCTTG 2644 >seq7711 Length=5731 Score = 89.7 bits (98), Expect = 8e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || |||| || | ||| ||||| || ||||| ||||| | |||||| || | ||| Sbjct 510 AACACCAGGTGAAGAGTTGATTCCTTCTGAATATTGTAATCCGCAAGAGTCCTCCCATCC 451 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | || ||||||||||||||||| | ||||||||||| ||||||||||| || || Sbjct 450 TCCAGCTGCTTTCCAGCAAAAATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTGTCC 391 Query 146186 TG 146187 || Sbjct 390 TG 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742354026160640