Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq7293 107 1e-18 seq9706 96.9 2e-15 seq35332 86.0 4e-12 seq4456 86.0 4e-12 seq93401 82.4 5e-11 seq55405 82.4 5e-11 >seq7293 Length=4729 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||||||| || |||| ||| | || || ||||| ||||||||||||| Sbjct 4703 CCTCCACGCAGCCTGAGAACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGCA 4644 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || ||||||||||| || |||||||| | || ||||||||| || Sbjct 4643 AGGGTACGGCCATCTTCCAACTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCCGGCGGA 4584 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | | || | |||| || || Sbjct 4583 ATTCCTTCCTTGTCCTGAATCTTAGCCTTAACGTTGTCAATGGTGTCGGAACTCTCAACC 4524 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| |||||||| ||||| || || ||||||||||| Sbjct 4523 TCAAGAGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 4477 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| |||||||| |||| || |||| |||| Sbjct 4460 AGAACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCGTCC 4401 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| || | || |||||||| ||| | | ||||||||| Sbjct 4400 TCGAGCTGCTTTCCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCCTCCTTGTCC 4341 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | ||||| ||||| || | ||||| || Sbjct 4340 TGAATCTTAGCCTTGACGTTATCGATGGTATCGGAGCTCTCGACCTCGAGAGTGATTGTC 4281 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||||| | ||||||||| |||||||||||| Sbjct 4280 TTGCCGGTCAAAGTTTTCACGAAGATCTGCATC 4248 >seq9706 Length=10732 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || |||| ||||| ||||| | || || ||||| || ||||| |||| | Sbjct 987 CCACCACGAAGCCGAAGCACAAGGTGCAGTGTCGACTCCTTCTGAATATTGTAATCGGCC 1046 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || |||| || | ||||||||| || || ||||| ||||||||||| || Sbjct 1047 AAAGTCCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTGGG 1106 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | || | || || || Sbjct 1107 ATTCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACC 1166 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||| ||||| || || || || |||||||| |||||||||||| Sbjct 1167 TCTAACGTAATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 1214 >seq35332 Length=499 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| ||||| || || | || ||| ||||| || ||||| |||| | Sbjct 244 CCACCACGGAGCCTGAGCACAAGATGGAGGGTGGATTCCTTCTGGATATTGTAATCGGCC 185 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| | || ||||| ||||| ||||| || || | | ||||| || || Sbjct 184 AAGGTACGGCCATCTTCCAATTGCTTTCCTGCAAAGATCAATCTTTGCTGATCCGGAGGA 125 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | |||| |||| || || Sbjct 124 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGAACTCTCAACT 65 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| |||||||| || ||||| || ||||||||||| Sbjct 64 TCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 18 >seq4456 Length=3005 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| || ||||| |||| ||| ||| |||| || | ||||| || ||||| Sbjct 2874 TTCCTTCTGAATATTGTAATCGGCCAGAGTACGCCCGTCTTCAAGTTGCTTTCCGGCGAA 2815 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | |||||||| || || | | ||| ||||| ||||| ||| | | Sbjct 2814 GATCAAGCGCTGCTGATCCGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTGACGTT 2755 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| ||||| ||||| || | || ||||| |||||||| || |||||||| Sbjct 2754 GTCGATCGTATCGGAACTCTCGACTTCAAGAGTTATGGTCTTGCCGGTTAGGGTTTTCAC 2695 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 2694 GAAGATCTGCAT 2683 >seq93401 Length=1125 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 34166 CCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACA-G 34224 || || ||||| || || || || | ||| ||||||||| |||||||| |||| || | Sbjct 1124 CCACGAAGCCTGAGGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCGGCCAAG 1065 Query 34225 CTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCAC 34284 || ||| | || ||||| ||||| || ||||| || || |||||||| ||| || | Sbjct 1064 GTG-CGGCCATCTTCCAATTGCTTCCCGGCGAAGATCAGACGCTGCTGATCGGGAGGAAT 1006 Query 34285 GCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTC 34344 | ||||| || || || ||| | | | | |||| ||| | ||||| || Sbjct 1005 TCCTTCCTTATCTTGAATTTTGGCCTTGACGTTGTCGATCGTATCAGAACTCTCGACCTC 946 Query 34345 CACCGTGATGGTTTTGCCGGTGA-GAGTTTTCACAAAGATCTGCAT 34389 | || || || || ||||| | | ||||| || ||||||||||| Sbjct 945 AAGGGTAATCGTCTTCCCGGTTANGGGTTTTGACGAAGATCTGCAT 900 >seq55405 Length=4719 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| |||||||| |||||||||| ||| | || ||| || || ||||| || || | Sbjct 2507 TCCTCCGCGCAGTCTCAGCACCAAGTGCAGTGTGGATTCCTTTTGGATGTTATAATCTGC 2566 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | | || || | |||||||||||| ||||| | || |||||| || || Sbjct 2567 AAGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGATCTGGTGG 2626 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| || || |||||| ||| | || |||| | || | |||||| Sbjct 2627 AATGCCCTCTTTATCTTGAATCTTTGCCTTCACATTATCTATTGTGTCTGAACTTTCGAC 2686 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||| || || || || | ||| ||||||||||| ||||| Sbjct 2687 CTCCAAGGTGACTGTCTTCCCAGTCAAAGTCTTCACAAAGATTTGCAT 2734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322575323443520