Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq90076 96.9 3e-15 seq51752 82.4 7e-11 >seq90076 Length=2428 Score = 96.9 bits (106), Expect = 3e-15 Identities = 368/577 (64%), Gaps = 3/577 (1%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 || || ||||| || || | ||| ||||| | |||||||||||||| || || | Sbjct 2010 CATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTTAAT 1951 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||||| ||| || ||||| | ||||||||| ||| ||| || || |||||| Sbjct 1950 CCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGCGCAAAAGCTTCCCGAGAAGAAT 1891 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 || ||||| || || || |||| | |||||| || | | | | | || Sbjct 1890 ATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAA---TGTCTCGGAGCCGTCG 1834 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 ||||| | ||||| || || |||| || || || | || || || Sbjct 1833 ATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCGCGG 1774 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || | | || ||||||| | ||| || || || || | || | |||||| Sbjct 1773 AAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTACATT 1714 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 || || ||||| ||||| ||||| ||||| || ||||| ||| | || |||| | | Sbjct 1713 TCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGGCGACT 1654 Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654 || ||||| ||||| | || | |||||| ||| || || ||| || || Sbjct 1653 TGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGGCGGCG 1594 Query 16655 AAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCA 16714 || || || || | ||| |||| || | ||| |||| | | ||| || ||||| | Sbjct 1593 AAGAAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAGGCTTTCCCAGTGA 1534 Query 16715 GAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTA 16774 | ||| | || || ||||| || || | |||||||| || || | || || || Sbjct 1533 CGGAGATCCTGCGACAAGTCGACTTCCTCCGCCGTCCAAAACGATGCCTCGGCTTTCTTG 1474 Query 16775 TACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 ||||| | ||| || | ||| ||| ||||||| Sbjct 1473 TACATCTCCCAGATTTGCGGGTACTGAATCGGAAACA 1437 >seq51752 Length=12828 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 || || ||||| || || | ||| ||||| | |||||||||||||| || || | Sbjct 502 CATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTTAAT 443 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||||| ||| || ||||| | ||||||||| ||| ||| || || |||||| Sbjct 442 CCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGCGCAAAAGCTTCCCGAGAAGAAT 383 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTC 16389 || ||||| || || || |||| | |||||| Sbjct 382 ATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTC 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461782722641200