Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq47681 89.7 1e-12 seq47021 89.7 1e-12 >seq47681 Length=10123 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| || || |||| |||| |||||||| || |||| || || ||| | || || Sbjct 5642 GATTTTGACTATGATTATTTTGGCTTCAAAACTCTTGAGAGGTCCTACCTCTTGAAGGTT 5583 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || || | |||||| | ||| || ||||||||| |||| ||||| ||||||||| Sbjct 5582 CAAGGAAAAGTTGTGGAAAGGCCTCAACATATGTTGATGAGAGTTGCTGTTGGGATTCAC 5523 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 |||||||| || || | || | || ||| ||| | |||| ||| | ||| Sbjct 5522 AAGGATGATATTGATTCTGCCATCAAAACATACCATATGATGTCTCAACGATGGTTCACA 5463 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | || ||||| || || || || || Sbjct 5462 CATGCATCTCCAACGCTTTTTAATGCTGGAAC 5431 >seq47021 Length=9578 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| || || |||| ||||| || ||||| || |||| || || ||| | || || Sbjct 3821 GATTTTGACTATGATTACTTTGGCTTTAAAACCCTTGAGAGGTCTTACCTCTTAAAGGTT 3762 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | |||||| | |||||||||||||||| | || ||| | || |||||| Sbjct 3761 CAAGGGAAGGTTGTGGAAAGGCCTCAGCACATGTTGATGAGGGTTGCTATTGGAATTCAC 3702 Query 248929 AAGGATGACATAGA 248942 |||||||| || || Sbjct 3701 AAGGATGATATTGA 3688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072030984784256