Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq7293 120 2e-22 seq119621 102 6e-17 seq35332 102 6e-17 seq61388 98.7 8e-16 seq9706 96.9 3e-15 seq55405 93.3 3e-14 seq119983 87.8 1e-12 seq7711 87.8 1e-12 >seq7293 Length=4729 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||||| || || | || ||| Sbjct 4685 ACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCATCTTCC 4626 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || |||||||| ||||||| ||| ||||| || || | || ||||||||| | Sbjct 4625 AACTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCCGGCGGAATTCCTTCCTTGTCCTGA 4566 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | | |||| || ||| ||||| | || || |||||| Sbjct 4565 ATCTTAGCCTTAACGTTGTCAATGGTGTCGGAACTCTCAACCTCAAGAGTGATGGTCTTG 4506 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||||||| || ||||| ||||| Sbjct 4505 CCGGTCAGAGTCTTAACGAAGATCTGCAT 4477 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| || ||||||||| |||||||| ||| || || |||| || || || Sbjct 4452 GTGCAGAGTTGACTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCGTCCTCGAGCTG 4393 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| ||||| || || ||||| || || | ||||||||||||| ||| || Sbjct 4392 CTTTCCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGAATCTT 4333 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | || | ||| ||||| | || || |||||||| || Sbjct 4332 AGCCTTGACGTTATCGATGGTATCGGAGCTCTCGACCTCGAGAGTGATTGTCTTGCCGGT 4273 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||| ||||| ||||| ||||| Sbjct 4272 CAAAGTTTTCACGAAGATCTGCAT 4249 >seq119621 Length=933 Score = 102 bits (112), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||||||||||||||||||||| ||| ||| | || || Sbjct 241 ACCAAGTGCAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGTGTGCGTCCATCCTCA 182 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || || || || | || || ||||| ||||| | |||||||||||| | Sbjct 181 AGTTGCTTACCTGCAAAAATAAGCCTTTGCTGGTCCGGAGGGATCCCCTCCTTGTCCTGA 122 Query 45248 ATTTTTTGC-TTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||||| || || || | | |||| | ||||| || | ||| ||||| || Sbjct 121 ATTTTNGGCTTTGACATTATCAATTGTGTCGGAGCTTTCCACTTCAAGGGTGATCGTTTT 62 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| |||||||| ||||| Sbjct 61 TCCAGTGAGGGTCTTTACAAAGATCTGCAT 32 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||| || ||||| ||||| || ||| | || || Sbjct 469 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACCATCCTCA 410 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| || || || ||||||| ||| ||||| || || | ||||||||||||| Sbjct 409 AGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 350 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| | ||||| |||| || || || || Sbjct 349 ATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATTGTTTTA 290 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || |||||||||||||| Sbjct 289 CCAGTCAGGGTTTTTACAAAGATTTGCAT 261 >seq35332 Length=499 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||||||||| |||||| || || |||| |||| ||| || |||||||| Sbjct 436 TCCTTCTGAATGTTATAGTCGGCCAAGGTACGGCCGTCTTCCAATTGCTTACCGGCGAAG 377 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| | || ||||| || || | ||| ||||||||| ||||| ||| || Sbjct 376 ATCAATCTTTGCTGGTCCGGCGGGATACCTTCCTTGTCCTGGATTTTAGCCTTCACGTTG 317 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| || ||||||||| | ||||||||||| || || || || || || Sbjct 316 TCGATCGTGTCCGAACTCTCCACCTCAAGAGTAATCGTCTTCCCTGTAAGGGTTTTGACG 257 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 256 AAGATCTGCAT 246 >seq61388 Length=1455 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||| || ||||| ||||| || ||| | || || Sbjct 382 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACCATCCTCA 441 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| || || || ||||||| ||| ||||| || || | ||||||||||||| Sbjct 442 AGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 501 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| | ||||| |||| || || || || Sbjct 502 ATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATTGTTTTA 561 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || |||||||||||||| Sbjct 562 CCAGTCAGGGTTTTTACAAAGATTTGCAT 590 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||||||||||||||||||||| ||| ||| | || || Sbjct 610 ACCAAGTGCAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGTGTGCGTCCATCCTCA 669 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || || || || | || || ||||| ||||| | |||||||||||| | Sbjct 670 AGTTGCTTACCTGCAAAAATAAGCCTTTGCTGGTCCGGAGGGATCCCCTCCTTGTCCTGA 729 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | |||| | ||||| || | ||| ||||| || Sbjct 730 ATTTTGGCTTTGACATTATCAATTGTGTCGGAGCTTTCCACTTCAAGGGTGATCGTTTTT 789 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| |||||||| ||||| Sbjct 790 CCAGTGAGGGTCTTTACAAAGATCTGCAT 818 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| ||||| ||||| || || | || || Sbjct 838 ACCAGGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCAGCAAGGGTACGTCCATCCTCA 897 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| || || || ||||||| || ||||| || || | || ||||||||| | Sbjct 898 AGTTGTTTGCCAGCAAAGATCAACCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGA 957 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 |||||| ||| || | | | |||| | |||||||| | || || ||||| Sbjct 958 ATTTTTGCCTTTACATTGTCGATGGTGTCGGAGCTTTCCACCTCAAGAGTGATAGTCTTT 1017 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || |||||||||||||| Sbjct 1018 CCAGTGAGGGTTTTTACAAAGATTTGCAT 1046 >seq9706 Length=10732 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| || |||||||||||| ||||| ||| || || |||| || || || Sbjct 1010 GTGCAGTGTCGACTCCTTCTGAATATTGTAATCGGCCAAAGTCCGTCCGTCCTCGAGCTG 1069 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || || | ||||| ||||| || || | ||||||||||| ||| || Sbjct 1070 CTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTT 1129 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| | ||||||||| | ||||| ||||| ||||| Sbjct 1130 CGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACCTCTAACGTAATGGTCTTCCCCGT 1189 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || ||||| ||||| ||||| ||| Sbjct 1190 TAGGGTTTTCACGAAGATCTGCATCTTG 1217 >seq55405 Length=4719 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| ||||| ||||| ||| ||| | || ||| Sbjct 3210 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGTGTGCGCCCATCCTCC 3269 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || || || || | || ||| ||||| || || | || ||||| ||| Sbjct 3270 AGTTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGTGGGATCCCTTCCTTATCCTGG 3329 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 |||||| || || | | | |||| | || ||||| | ||| || ||||| Sbjct 3330 ATTTTTGCTTTGACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATGGTCTTA 3389 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| || |||||||||||||| Sbjct 3390 CCTGTGAGAGTTTTAACAAAGATTTGCAT 3418 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| || |||||||| || | | || || Sbjct 2754 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTCCTTCCATCTTCA 2813 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | || ||| || || ||||| | || |||||||| Sbjct 2814 AGCTGCTTACCAGCAAAGATGAGCCTCTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGG 2873 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||||| | | | | || || ||| || |||| |||||| ||||| Sbjct 2874 ATCTTTGCTTTAACATTATCAATGGTATCTGAACTCTCAACTTCCAAGGTAATAGTCTTC 2933 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| |||||||||||||| Sbjct 2934 CCAGTAAGAGTCTTGACAAAGATTTGCAT 2962 >seq119983 Length=969 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||||||||| ||||| || || | || |||| Sbjct 394 CAAGATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGCAAGGGTACGGCCATCCTCCA 335 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || ||||| || | || ||| || || || || | || || |||||| | Sbjct 334 GCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCTTTGTCCTGGA 275 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | ||| ||| || | | | | || || ||||||||||| ||| |||||||| | Sbjct 274 TCTTTGCCTTGACATTATCAATGGTATCAGAACTCTCCACCTCCAAGGTGATCGTCTTTC 215 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | |||| |||||| ||||| || ||||| Sbjct 214 CTGTCAAAGTCTTAACAAATATCTGCAT 187 >seq7711 Length=5731 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||||||||| ||||| || || | || |||| Sbjct 734 CAAGATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGCAAGGGTACGGCCATCCTCCA 675 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || ||||| || | || ||| || || || || | || || |||||| | Sbjct 674 GCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCTTTGTCCTGGA 615 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | ||| ||| || | | | | || || ||||||||||| ||| |||||||| | Sbjct 614 TCTTTGCCTTGACATTATCAATGGTATCAGAACTCTCCACCTCCAAGGTGATCGTCTTTC 555 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | |||| |||||| ||||| || ||||| Sbjct 554 CTGTCAAAGTCTTAACAAATATCTGCAT 527 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||| ||| || || ||||||||||| ||||| || || | | || Sbjct 510 AACACCAGGTGAAGAGTTGATTCCTTCTGAATATTGTAATCCGCAAGAGTCCTCCCATCC 451 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| || ||||| || || ||||| ||||| || || || || | || ||||||||| Sbjct 450 TCCAGCTGCTTTCCAGCAAAAATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTGTCC 391 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 ||| || |||| | || | || | | || | ||||||||||| ||||| || Sbjct 390 TGAATCTTG-GCTTTAACGTTGTCAATCGTATCAGAGCTCTCCACCTCCAAAGTAATTGT 332 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| ||||| |||||||| ||||| Sbjct 331 TTTCCCTGTCAGGGTCTTAACAAAGATCTGCAT 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394467828918982