Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq90076 104 2e-17 seq51752 104 2e-17 >seq90076 Length=2428 Score = 104 bits (114), Expect = 2e-17 Identities = 120/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || || || ||||| || ||||| ||||| |||| || | |||||||| || ||| Sbjct 2013 AAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTT 1954 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAA 14319 ||||| ||||| ||||| || ||||||| |||||||||||| || || | | || || || Sbjct 1953 AATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGC-GCAAAAGCTTCCCGAGAA 1895 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC 14358 ||||||||| || || ||| || || |||| ||| || Sbjct 1894 GAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTC 1856 >seq51752 Length=12828 Score = 104 bits (114), Expect = 2e-17 Identities = 120/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || || || ||||| || ||||| ||||| |||| || | |||||||| || ||| Sbjct 505 AAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTT 446 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAA 14319 ||||| ||||| ||||| || ||||||| |||||||||||| || || | | || || || Sbjct 445 AATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGC-GCAAAAGCTTCCCGAGAA 387 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC 14358 ||||||||| || || ||| || || |||| ||| || Sbjct 386 GAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTC 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481585049516560