Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq95098 93.3 3e-14 seq67990 91.5 1e-13 seq55405 89.7 4e-13 seq35333 89.7 4e-13 seq119621 84.2 2e-11 seq61388 84.2 2e-11 >seq95098 Length=1037 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || || || || | ||| || |||||||| |||||||||||||| || ||| Sbjct 848 CCTCCGCGAAGCCTGAGCACAAGGTGGAGGGTTGATTCCTTTTGAATGTTGTAATCCGCC 907 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | |||||| || ||| |||| || |||||||||||| || Sbjct 908 AAAGTACGGCCATCTTCGAGTTGTTTTCCGGCAAAGATCAGCCTTTGTTGATCCGGAGGA 967 Query 18219 ACGCCTTCCTTATC 18232 | |||||||| || Sbjct 968 ATCCCTTCCTTGTC 981 >seq67990 Length=6038 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || || |||| |||||| ||||| || |||||||||||||| || || Sbjct 4579 TCCTCCCCTGAGCCTTAGGACCAAGTGAAGCGTTGACTCCTTTTGAATGTTGTAATCTGC 4520 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCC 18212 | ||| | ||||||||||||||| || ||| | || | ||| || |||||| Sbjct 4519 AAGAGTTCGGCCATCTTCCAATTGTTTACCAGCAAAAATCAATCTCTGCTGATCC 4465 >seq55405 Length=4719 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| ||||||||||||||| || || |||||||| || || Sbjct 2964 CCACCTCGAAGGCGAAGCACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAATCAGCA 3023 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| | || || || ||| |||| ||||| || || || || Sbjct 3024 AGAGTACGACCATCTTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGGTCTGGTGGG 3083 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || |||||||| ||||| |||||| | ||| ||||||| ||| | Sbjct 3084 ATACCCTCCTTATCCTGAATTTTGGCCTTGACATTGTCAATAGTGTCAGAACTCTCAACT 3143 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| |||| || || | ||||| ||||| || ||||| Sbjct 3144 TCCAAAGTGATAGTTTTTCCAGTAAGGGTTTTCACAAAGATCTGCAT 3190 >seq35333 Length=5286 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| |||| | ||| |||| ||||| |||||||||||||| ||||| ||||||||| Sbjct 192 CCTCCACGTAAACGAAGAACCAGATGAAGAGTTGATTCTTTTTGGATGTTATAGTCGGCC 133 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||||||| || || ||| |||| | ||||| || ||| || Sbjct 132 AAGGTCCGGCCGTCTTCCAATTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGCGGG 73 Query 18219 ACGCCTTCCTTATC 18232 | |||||||| || Sbjct 72 ATTCCTTCCTTGTC 59 >seq119621 Length=933 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| |||| ||| ||||| || || || |||||||||||||| || Sbjct 259 CCACCCCTGAGACGAAGGACCAAGTGCAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCA 200 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||| || | ||| || || ||| | ||||| ||||| || ||| || Sbjct 199 AGTGTGCGTCCATCCTCAAGTTGCTTACCTGCAAAAATAAGCCTTTGCTGGTCCGGAGGG 140 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || ||||| || ||||| | ||| ||||| | || Sbjct 139 ATCCCCTCCTTGTCCTGAATTTTNGGCTTTGACATTATCAATTGTGTCGGAGCTTTCCAC 80 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||||| |||| || || | || |||||||| || ||||| Sbjct 79 TTCAAGGGTGATCGTTTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 32 >seq61388 Length=1455 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| |||| ||| ||||| || || || |||||||||||||| || Sbjct 592 CCACCCCTGAGACGAAGGACCAAGTGCAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCA 651 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||| || | ||| || || ||| | ||||| ||||| || ||| || Sbjct 652 AGTGTGCGTCCATCCTCAAGTTGCTTACCTGCAAAAATAAGCCTTTGCTGGTCCGGAGGG 711 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || ||||| | || ||||| | ||| ||||| | || Sbjct 712 ATCCCCTCCTTGTCCTGAATTT-TGGCTTTGACATTATCAATTGTGTCGGAGCTTTCCAC 770 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||||| |||| || || | || |||||||| || ||||| Sbjct 771 TTCAAGGGTGATCGTTTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378760813367790