Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq90076 196 6e-45 seq51752 163 4e-35 seq47021 86.0 8e-12 >seq90076 Length=2428 Score = 196 bits (216), Expect = 6e-45 Identities = 382/559 (68%), Gaps = 8/559 (1%) Strand=Plus/Minus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| ||||||||||||||||| || |||||||||| ||||| ||||| || || || Sbjct 2014 CAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGT 1955 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATG-ATCCGGAAA 33696 | ||| ||||||| || |||||||| ||||||||||| | || || | ||| || | Sbjct 1954 TAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGA 1896 Query 33697 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGCTGT 33753 |||| |||||||| || ||| |||||||| |||| ||| | || | ||| || || Sbjct 1895 AGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGT 1836 Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 | ||||| | | ||||| | |||||| || || || |||| |||||| |||| Sbjct 1835 C---GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGG 1779 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | ||||| | ||| ||||| | ||||| | || || |||| | ||| | Sbjct 1778 CGCGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGT 1719 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 ||||||| || |||||||| || || || ||||| || || ||||| | ||||||| Sbjct 1718 ACATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGG 1659 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 | || |||||| | || | | || | |||||| || || || || || Sbjct 1658 CGACTTGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGG 1599 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 34053 | || || || || | || || | || || | ||| ||||| | || || | | || Sbjct 1598 CGGCGAAGAAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAGGCTTTCCC 1539 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | | | || ||| | || | || ||||| ||| | |||||||| |||||||| || | Sbjct 1538 AGTGACGGAGATCCTGCGACAAGTCGACTTCCTCCGCCGTCCAAAACGATGCCTCGGCTT 1479 Query 34114 TTTTATACATATTCCAGAT 34132 | || ||||| | |||||| Sbjct 1478 TCTTGTACATCTCCCAGAT 1460 >seq51752 Length=12828 Score = 163 bits (180), Expect = 4e-35 Identities = 264/374 (71%), Gaps = 8/374 (2%) Strand=Plus/Minus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| ||||||||||||||||| || |||||||||| ||||| ||||| || || || Sbjct 506 CAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGT 447 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATG-ATCCGGAAA 33696 | ||| ||||||| || |||||||| ||||||||||| | || || | ||| || | Sbjct 446 TAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGA 388 Query 33697 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGCTGT 33753 |||| |||||||| || ||| |||||||| |||| ||| | || | ||| || || Sbjct 387 AGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGT 328 Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 | ||||| | | ||||| | |||||| || || || |||| |||||| |||| Sbjct 327 C---GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGG 271 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | ||||| | ||| ||||| | ||||| | || || |||| | ||| | Sbjct 270 CGCGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGT 211 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 ||||||| || |||||||| || || || ||||| || || ||||| | ||||||| Sbjct 210 ACATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGG 151 Query 33934 TAATCTGCACTTCT 33947 | || |||||| Sbjct 150 CGACTTGGACTTCT 137 >seq47021 Length=9578 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| || || || | || ||||| || ||||| |||||| ||| || | | || Sbjct 3609 AGTTCCAGCGTTGAAAAGTGTGGGAGATGCATGCGTGAACCATCTTTGGGACATCATATG 3668 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| || | |||||| || || ||||| | ||| |||||||| | || || | ||| | Sbjct 3669 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGCAACCCTCATCA 3727 Query 63781 ACATGTGCTGAGGTCTTTCAACAA 63804 ||||||||||||| ||||| |||| Sbjct 3728 ACATGTGCTGAGGCCTTTCCACAA 3751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628824519353760