Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq90076 84.2 2e-11 seq51752 84.2 2e-11 seq47681 84.2 2e-11 seq47021 82.4 7e-11 >seq90076 Length=2428 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 || || || ||||| || || | || ||||||| |||| || || || || ||| Sbjct 2013 AAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTT 1954 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAA-CCAGAAAA 11745 ||||| ||||| ||||| || ||||||| ||||||||| || ||||| | || || || Sbjct 1953 AATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGC-GCAAAAGCTTCCCGAGAA 1895 Query 11746 GAATATTCCCTCCAC 11760 ||||||||| ||||| Sbjct 1894 GAATATTCCTTCCAC 1880 >seq51752 Length=12828 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 || || || ||||| || || | || ||||||| |||| || || || || ||| Sbjct 505 AAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTT 446 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAA-CCAGAAAA 11745 ||||| ||||| ||||| || ||||||| ||||||||| || ||||| | || || || Sbjct 445 AATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGC-GCAAAAGCTTCCCGAGAA 387 Query 11746 GAATATTCCCTCCAC 11760 ||||||||| ||||| Sbjct 386 GAATATTCCTTCCAC 372 >seq47681 Length=10123 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 38401 TGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCC 38460 |||||| ||| ||||| || ||||| | || |||||||||||| |||||||| || Sbjct 5419 TGAGGCCTTGGTGTTCCAGCATTAAAAAGCGTTGGAGATGCATGTGTGAACCATCGTTGA 5478 Query 38461 GACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGAT 38520 |||| || ||||||| || || ||| |||||| | |||||| || | || Sbjct 5479 GACATCATATGGTATGTTTTGATGGCAGAATCAATATCATCCTTGTGAATCCCAACAGCA 5538 Query 38521 ACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || ||||| | ||||||||| || ||||| Sbjct 5539 ACTCTCATCAACATATGTTGAGGCCTTTC 5567 >seq47021 Length=9578 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 38410 GGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAA 38469 |||||||| ||||| || | ||| ||||||||||| |||||||| ||| |||| | Sbjct 3607 GGAGTTCCAGCGTTGAAAAGTGTGGGAGATGCATGCGTGAACCATCTTTGGGACATCATA 3666 Query 38470 TTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATT 38529 | ||||||| || || ||| |||||| | |||||| || | || |||||||| Sbjct 3667 TGGTATGTTTTAATAGCAGAATCAATATCATCCTTGTGAATTCCAATAGCAACCCTCATC 3726 Query 38530 AGCATATGTTGTGGTCTTTC 38549 | ||| || || || ||||| Sbjct 3727 AACATGTGCTGAGGCCTTTC 3746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467786041808480